Variant report

Variant	rs541100103
Chromosome Location	chr9:100747001-100747002
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:29)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:29 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100675954..100709047-chr9:100737887..100755543,175	K562	blood:
2	chr9:100745732..100748566-chr9:100835046..100837989,2	MCF-7	breast:
3	chr9:100674231..100678302-chr9:100744904..100747134,4	MCF-7	breast:
4	chr9:100744471..100747062-chr9:100817673..100820807,4	MCF-7	breast:
5	chr9:100743079..100747890-chr9:100817276..100822371,7	K562	blood:
6	chr8:86019469..86022152-chr9:100745432..100747844,2	MCF-7	breast:
7	chr9:100746762..100748663-chr9:100996503..100998801,2	MCF-7	breast:
8	chr9:100746284..100748016-chr9:100953069..100955569,2	MCF-7	breast:
9	chr9:100682029..100688801-chr9:100740969..100749393,29	MCF-7	breast:
10	chr9:100742340..100750312-chr9:100816953..100823782,17	MCF-7	breast:
11	chr14:34417944..34420786-chr9:100744880..100747851,2	MCF-7	breast:
12	chr9:100746007..100747769-chr9:100880971..100883349,2	MCF-7	breast:
13	chr9:99179878..99181441-chr9:100745582..100747137,2	K562	blood:
14	chr9:100458946..100460891-chr9:100746178..100747740,2	MCF-7	breast:
15	chr9:100393798..100396909-chr9:100744219..100748139,5	MCF-7	breast:
16	chr9:100744956..100747904-chr9:100835369..100837055,2	K562	blood:
17	chr9:100395301..100398247-chr9:100745097..100747092,2	MCF-7	breast:
18	chr9:100744956..100747210-chr9:100835059..100837055,2	K562	blood:
19	chr9:100745249..100747545-chr9:100817221..100819862,3	K562	blood:
20	chr9:100744716..100748585-chr9:100832900..100838437,10	MCF-7	breast:
21	chr17:66286131..66288526-chr9:100744742..100747480,2	MCF-7	breast:
22	chr9:100705963..100708319-chr9:100744697..100747203,2	MCF-7	breast:
23	chr9:100744384..100747791-chr9:101014978..101019057,4	MCF-7	breast:
24	chr11:1770145..1772134-chr9:100745405..100747751,2	MCF-7	breast:
25	chr9:100678422..100708679-chr9:100734559..100755577,174	K562	blood:
26	chr9:100745634..100748414-chr9:100792592..100795011,2	MCF-7	breast:
27	chr9:100682507..100691249-chr9:100739828..100748095,35	MCF-7	breast:
28	chr1:24286212..24286783-chr9:100746462..100747243,2	HCT-116	colon:
29	chr9:100394431..100399065-chr9:100743200..100747046,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000201830	Chromatin interaction
ENSG00000136925	Chromatin interaction
ENSG00000189266	Chromatin interaction
ENSG00000095380	Chromatin interaction
ENSG00000106789	Chromatin interaction
ENSG00000095383	Chromatin interaction
ENSG00000136936	Chromatin interaction
ENSG00000165244	Chromatin interaction
ENSG00000136937	Chromatin interaction
ENSG00000231521	Chromatin interaction
ENSG00000108932	Chromatin interaction
ENSG00000136929	Chromatin interaction
ENSG00000133739	Chromatin interaction
ENSG00000136932	Chromatin interaction
ENSG00000244242	Chromatin interaction
ENSG00000212521	Chromatin interaction
ENSG00000224001	Chromatin interaction
ENSG00000129521	Chromatin interaction
ENSG00000106785	Chromatin interaction
ENSG00000141337	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893612	chr9:100732802-100754703	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	esv3426844	chr9:100744156-100747104	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	33 gene(s)	inside rSNPs	diseases
3	esv3525787	chr9:100744481-100748729	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	33 gene(s)	inside rSNPs	diseases
4	esv3525788	chr9:100744481-100748729	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	33 gene(s)	inside rSNPs	diseases
5	esv3355582	chr9:100744831-100749229	Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
6	esv3441780	chr9:100745156-100748104	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	33 gene(s)	inside rSNPs	diseases
7	esv3327191	chr9:100746156-100749004	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100744000-100747800	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr9:100744200-100747800	Active TSS	Fetal Brain Female	brain
3	chr9:100744400-100747800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr9:100744600-100747400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr9:100744600-100747400	Active TSS	Psoas Muscle	Psoas
6	chr9:100744600-100747400	Active TSS	Osteobl	bone
7	chr9:100744600-100747600	Active TSS	A549	lung
8	chr9:100744600-100747600	Active TSS	HSMMtube	muscle
9	chr9:100744600-100747600	Active TSS	NHDF-Ad	bronchial
10	chr9:100744600-100747800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:100744600-100747800	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr9:100744600-100747800	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr9:100744600-100748000	Active TSS	Brain Angular Gyrus	brain
14	chr9:100744600-100748000	Active TSS	NHLF	lung
15	chr9:100744600-100748600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr9:100744800-100747200	Active TSS	Pancreas	Pancrea
17	chr9:100744800-100747400	Active TSS	Brain Anterior Caudate	brain
18	chr9:100744800-100747400	Active TSS	Stomach Mucosa	stomach
19	chr9:100744800-100747400	Active TSS	Stomach Smooth Muscle	stomach
20	chr9:100744800-100747400	Active TSS	K562	blood
21	chr9:100744800-100747600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:100744800-100747600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr9:100744800-100747600	Active TSS	Aorta	Aorta
24	chr9:100744800-100747600	Active TSS	Fetal Lung	lung
25	chr9:100744800-100747600	Active TSS	Gastric	stomach
26	chr9:100744800-100747600	Active TSS	Rectal Mucosa Donor 31	rectum
27	chr9:100744800-100747600	Active TSS	Rectal Smooth Muscle	rectum
28	chr9:100744800-100747600	Active TSS	Sigmoid Colon	Sigmoid Colon
29	chr9:100744800-100747600	Active TSS	Hela-S3	cervix
30	chr9:100744800-100747600	Active TSS	NHEK	skin
31	chr9:100744800-100747800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr9:100744800-100747800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr9:100744800-100747800	Active TSS	Brain Substantia Nigra	brain
34	chr9:100744800-100747800	Active TSS	Fetal Intestine Large	intestine
35	chr9:100744800-100747800	Active TSS	Small Intestine	intestine
36	chr9:100744800-100748000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
37	chr9:100744800-100748000	Active TSS	Esophagus	oesophagus
38	chr9:100744800-100748000	Active TSS	Fetal Kidney	kidney
39	chr9:100744800-100748000	Active TSS	Right Atrium	heart
40	chr9:100744800-100748200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr9:100744800-100748400	Active TSS	HSMM	muscle
42	chr9:100745000-100747200	Active TSS	HepG2	liver
43	chr9:100745000-100747400	Active TSS	H9 Cell Line	embryonic stem cell
44	chr9:100745000-100747400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr9:100745000-100747400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr9:100745000-100747400	Active TSS	Colon Smooth Muscle	Colon
47	chr9:100745000-100747400	Active TSS	Thymus	Thymus
48	chr9:100745000-100747400	Active TSS	Spleen	Spleen
49	chr9:100745000-100747600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr9:100745000-100747600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin

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