Variant report

Variant	rs541110023
Chromosome Location	chr14:25134138-25134139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv510631	chr14:25045183-25172311	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv901503	chr14:25133186-25172456	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25129000-25134800	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr14:25129000-25135200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr14:25129000-25135400	Enhancers	Primary hematopoietic stem cells	blood
4	chr14:25129800-25134400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr14:25130400-25135400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr14:25131400-25135400	Enhancers	Primary T cells fromperipheralblood	blood
7	chr14:25131600-25134400	Enhancers	GM12878-XiMat	blood
8	chr14:25131600-25135600	Enhancers	Primary B cells from peripheral blood	blood
9	chr14:25132200-25134200	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr14:25132200-25134800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr14:25132400-25134200	Weak transcription	Primary B cells from cord blood	blood
12	chr14:25132400-25134200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr14:25132400-25134400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr14:25132400-25135200	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr14:25132600-25134200	Weak transcription	Primary T cells from cord blood	blood
16	chr14:25132600-25134600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr14:25132800-25134400	Weak transcription	Thymus	Thymus
18	chr14:25132800-25134600	Weak transcription	Adipose Nuclei	Adipose
19	chr14:25133200-25134600	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr14:25133200-25134600	Enhancers	NHEK	skin
21	chr14:25133200-25135400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr14:25133200-25135400	Enhancers	HMEC	breast
23	chr14:25133600-25135400	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr14:25133800-25135200	Enhancers	Fetal Thymus	thymus
25	chr14:25134000-25134600	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr14:25134000-25135200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr14:25134000-25135400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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