Variant report

Variant	rs541110148
Chromosome Location	chr10:93224596-93224597
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr10:93224308-93224626	IMR90	lung:	n/a	chr10:93224452-93224472 chr10:93224452-93224463 chr10:93224451-93224467 chr10:93224451-93224466 chr10:93224454-93224470 chr10:93224455-93224469
2	MAFK	chr10:93224299-93224635	HepG2	liver:	n/a	chr10:93224452-93224472 chr10:93224452-93224463 chr10:93224451-93224467 chr10:93224451-93224466 chr10:93224454-93224470 chr10:93224455-93224469
3	MAFF	chr10:93224346-93224600	HepG2	liver:	n/a	chr10:93224455-93224469 chr10:93224449-93224467
4	MAFK	chr10:93224315-93224629	HepG2	liver:	n/a	chr10:93224452-93224472 chr10:93224452-93224463 chr10:93224451-93224467 chr10:93224451-93224466 chr10:93224454-93224470 chr10:93224455-93224469

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93169232..93170758-chr10:93223754..93225469,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271385	TF binding region
ENSG00000165338	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040403	chr10:93165819-93225036	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv895891	chr10:93176418-93269972	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv948134	chr10:93224011-93239053	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93184400-93226400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:93186000-93226800	Weak transcription	Pancreas	Pancrea
3	chr10:93214200-93272000	Weak transcription	HUVEC	blood vessel
4	chr10:93218000-93230600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:93218600-93228200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:93219600-93247600	Weak transcription	HSMMtube	muscle
7	chr10:93220200-93224800	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr10:93220200-93225000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:93220200-93225000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:93220200-93226200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr10:93220200-93226800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr10:93220600-93226600	Weak transcription	NHLF	lung
13	chr10:93220600-93226800	Weak transcription	A549	lung
14	chr10:93220600-93271400	Weak transcription	HMEC	breast
15	chr10:93220800-93229200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr10:93220800-93248200	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr10:93220800-93259400	Weak transcription	Primary T cells from cord blood	blood
18	chr10:93221000-93226600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr10:93221000-93228800	Weak transcription	Primary B cells from cord blood	blood
20	chr10:93221800-93224800	Strong transcription	Duodenum Smooth Muscle	Duodenum
21	chr10:93221800-93225000	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr10:93221800-93225200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr10:93221800-93225400	Strong transcription	HSMM	muscle
24	chr10:93221800-93226600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr10:93222000-93225200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr10:93222200-93226000	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr10:93222200-93228000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:93222400-93224600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr10:93222400-93225000	Weak transcription	Brain Hippocampus Middle	brain
30	chr10:93222400-93225200	Strong transcription	Dnd41	blood
31	chr10:93222400-93226400	Weak transcription	Brain Cingulate Gyrus	brain
32	chr10:93222400-93228200	Strong transcription	Fetal Brain Male	brain
33	chr10:93222400-93230400	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr10:93222600-93226800	Weak transcription	Gastric	stomach
35	chr10:93222600-93226800	Weak transcription	Thymus	Thymus
36	chr10:93222600-93228000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr10:93222600-93254400	Weak transcription	NHDF-Ad	bronchial
38	chr10:93222800-93227000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr10:93222800-93244600	Weak transcription	Osteobl	bone
40	chr10:93223000-93224600	Strong transcription	Muscle Satellite Cultured Cells	--
41	chr10:93223000-93226600	Weak transcription	Right Ventricle	heart
42	chr10:93223000-93226800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr10:93223000-93227000	Weak transcription	Spleen	Spleen
44	chr10:93223000-93227200	ZNF genes & repeats	Fetal Lung	lung
45	chr10:93223200-93225200	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr10:93223200-93230400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr10:93223400-93225200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr10:93223400-93226800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr10:93223400-93228400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr10:93223600-93224600	ZNF genes & repeats	Brain Germinal Matrix	brain

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