Variant report

Variant	rs541112236
Chromosome Location	chr4:85878883-85878884
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:85876909..85884375-chr4:85886007..85890757,11	MCF-7	breast:
2	chr4:85877154..85880144-chr4:85883390..85884959,2	MCF-7	breast:
3	chr4:85877992..85883015-chr4:85885939..85888953,5	MCF-7	breast:
4	chr4:85871120..85875052-chr4:85876385..85879344,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180769	Chromatin interaction
ENSG00000163625	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv508295	chr4:85822802-85885027	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv879516	chr4:85877561-85895436	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85845600-85882800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:85865200-85886400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:85865800-85885400	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:85866000-85886200	Weak transcription	Fetal Intestine Small	intestine
5	chr4:85866400-85879200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:85866800-85884600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:85869600-85879800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:85869800-85879200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:85870200-85879200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:85870400-85879200	Weak transcription	Adipose Nuclei	Adipose
11	chr4:85870400-85880800	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr4:85871000-85879200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr4:85872000-85886600	Weak transcription	Lung	lung
14	chr4:85873200-85879200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr4:85873200-85879200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr4:85873400-85879200	Weak transcription	Pancreas	Pancrea
17	chr4:85873400-85879600	Weak transcription	Gastric	stomach
18	chr4:85873400-85886600	Weak transcription	Esophagus	oesophagus
19	chr4:85873800-85879000	Weak transcription	NH-A	brain
20	chr4:85873800-85880600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr4:85873800-85884800	Weak transcription	HSMM	muscle
22	chr4:85873800-85885400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr4:85873800-85885800	Weak transcription	Osteobl	bone
24	chr4:85874000-85884600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr4:85874200-85879200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr4:85874600-85879400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr4:85874600-85886200	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr4:85875000-85880000	Enhancers	Brain Cingulate Gyrus	brain
29	chr4:85875200-85881600	Enhancers	Brain Anterior Caudate	brain
30	chr4:85876000-85882000	Enhancers	Brain Hippocampus Middle	brain
31	chr4:85876400-85881400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr4:85876400-85885400	Weak transcription	Left Ventricle	heart
33	chr4:85876600-85879200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr4:85876600-85879200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr4:85876600-85879600	Weak transcription	Ovary	ovary
36	chr4:85876600-85884200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr4:85876600-85885200	Weak transcription	Fetal Brain Male	brain
38	chr4:85876800-85879800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr4:85876800-85882200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr4:85877000-85885200	Enhancers	Primary neutrophils fromperipheralblood	blood
41	chr4:85877200-85881400	Enhancers	A549	lung
42	chr4:85877400-85879200	Weak transcription	HMEC	breast
43	chr4:85877400-85880600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr4:85877400-85881800	Enhancers	Pancreatic Islets	Pancreatic Islet
45	chr4:85877400-85886200	Weak transcription	Rectal Smooth Muscle	rectum
46	chr4:85877600-85879000	Weak transcription	Colon Smooth Muscle	Colon
47	chr4:85877600-85879200	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr4:85877600-85879200	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr4:85877600-85879200	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr4:85877600-85879600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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