Variant report

Variant	rs541144357
Chromosome Location	chr2:171734811-171734812
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:171729910..171732029-chr2:171733045..171735260,2	MCF-7	breast:
2	chr2:171721677..171726010-chr2:171731476..171734906,5	K562	blood:
3	chr2:171733620..171736604-chr2:171737963..171739920,3	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508179	chr2:171708404-171736003	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv431801	chr2:171721493-171966493	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv961358	chr2:171734088-171734919	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171730200-171735000	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr2:171731200-171740400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr2:171734000-171735200	Enhancers	HMEC	breast
4	chr2:171734200-171735200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:171734200-171735400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:171734400-171735400	Enhancers	NHEK	skin
7	chr2:171734600-171735000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr2:171734600-171735000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:171734600-171735000	Enhancers	Stomach Mucosa	stomach
10	chr2:171734600-171735000	Enhancers	Hela-S3	cervix
11	chr2:171734600-171735200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr2:171734600-171735200	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr2:171734600-171735200	Enhancers	NH-A	brain
14	chr2:171734600-171735400	Enhancers	Primary B cells from peripheral blood	blood
15	chr2:171734600-171735400	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr2:171734800-171735000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr2:171734800-171735400	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr2:171734800-171735400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr2:171734800-171735400	Active TSS	Duodenum Mucosa	Duodenum
20	chr2:171734800-171735400	Flanking Active TSS	Dnd41	blood

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