Variant report

Variant	rs541172181
Chromosome Location	chr6:45967731-45967732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv428482	chr6:45926644-46050182	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv885867	chr6:45936223-45982976	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1025846	chr6:45955173-46047269	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2585595	chr6:45966912-45968343	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv2367588	chr6:45967272-45967999	Weak transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv3472533	chr6:45967340-45967871	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv3527024	chr6:45967355-45967903	Genic enhancers Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv3472532	chr6:45967374-45967885	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv3527022	chr6:45967375-45967886	Weak transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv3472531	chr6:45967380-45967813	Weak transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv3527023	chr6:45967387-45967843	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
13	esv3527026	chr6:45967389-45967822	Weak transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv3472528	chr6:45967402-45967858	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv3527025	chr6:45967405-45967841	Genic enhancers Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv4021	chr6:45967407-45967876	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv3348100	chr6:45967420-45967805	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
18	esv3414721	chr6:45967431-45967817	Weak transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
19	esv3527027	chr6:45967436-45967824	Weak transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
20	esv3472529	chr6:45967445-45967790	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
21	esv3527028	chr6:45967457-45967785	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
22	nsv349891	chr6:45967459-45967785	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
23	esv3472534	chr6:45967459-45967803	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
24	esv3527030	chr6:45967459-45967803	Weak transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
25	esv1008384	chr6:45967462-45968201	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
26	esv1256091	chr6:45967475-45967802	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45956800-45969000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:45957000-45969000	Weak transcription	Spleen	Spleen
3	chr6:45957000-45977400	Weak transcription	Fetal Intestine Large	intestine
4	chr6:45960400-45970400	Weak transcription	Small Intestine	intestine
5	chr6:45965800-45970400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:45966200-45969200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:45966200-45978200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:45966400-45967800	Weak transcription	Fetal Heart	heart
9	chr6:45966600-45968600	Weak transcription	Placenta	Placenta
10	chr6:45966600-45968800	Weak transcription	Right Atrium	heart
11	chr6:45966600-45969000	Weak transcription	Lung	lung
12	chr6:45966800-45969000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr6:45967000-45968000	Weak transcription	Left Ventricle	heart
14	chr6:45967000-45968000	Weak transcription	Psoas Muscle	Psoas
15	chr6:45967000-45968000	Weak transcription	Right Ventricle	heart
16	chr6:45967200-45967800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr6:45967600-45967800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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