Variant report

Variant	rs541176329
Chromosome Location	chr1:95121040-95121041
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001587	chr1:95027691-95318680	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	esv2755232	chr1:95119790-95151813	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv432509	chr1:95119790-95151813	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2756851	chr1:95119790-95158603	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv2758950	chr1:95119790-95158603	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95114600-95123400	Weak transcription	NHDF-Ad	bronchial
2	chr1:95114600-95124000	Weak transcription	Small Intestine	intestine
3	chr1:95114600-95126600	Weak transcription	Esophagus	oesophagus
4	chr1:95114800-95123800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr1:95118800-95121200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:95118800-95121200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:95118800-95121200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:95119000-95125000	Enhancers	Fetal Heart	heart
9	chr1:95119400-95123400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr1:95119400-95123400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:95119400-95123400	Weak transcription	Lung	lung
12	chr1:95119600-95123400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr1:95119600-95123400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:95119600-95125200	Enhancers	Hela-S3	cervix
15	chr1:95119600-95126400	Weak transcription	Left Ventricle	heart
16	chr1:95119800-95122600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr1:95119800-95123400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:95119800-95123400	Weak transcription	Aorta	Aorta
19	chr1:95119800-95123400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr1:95119800-95123400	Weak transcription	Right Atrium	heart
21	chr1:95120000-95122200	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr1:95120000-95122400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr1:95120000-95122400	Weak transcription	NH-A	brain
24	chr1:95120000-95123400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr1:95120000-95123400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr1:95120000-95123400	Weak transcription	Gastric	stomach
27	chr1:95120000-95123400	Weak transcription	Stomach Mucosa	stomach
28	chr1:95120000-95123600	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr1:95120000-95123800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr1:95120000-95126000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr1:95120000-95126600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr1:95120000-95126600	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr1:95120200-95122400	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr1:95120200-95122800	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr1:95120400-95121600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr1:95120400-95122400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr1:95120400-95123400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr1:95120400-95123400	Weak transcription	A549	lung
39	chr1:95120400-95123600	Weak transcription	Colon Smooth Muscle	Colon
40	chr1:95120600-95122200	Strong transcription	Fetal Intestine Small	intestine
41	chr1:95120600-95122400	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr1:95120600-95123400	Weak transcription	Duodenum Mucosa	Duodenum
43	chr1:95120600-95123600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr1:95120600-95123600	Weak transcription	NHLF	lung
45	chr1:95120800-95122400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr1:95120800-95122600	Weak transcription	NHEK	skin
47	chr1:95120800-95123400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr1:95120800-95123400	Weak transcription	Fetal Intestine Large	intestine
49	chr1:95120800-95123400	Weak transcription	Ovary	ovary
50	chr1:95120800-95123400	Weak transcription	HepG2	liver

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