Variant report

Variant	rs541185402
Chromosome Location	chr15:100124647-100124648
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:100117617..100121955-chr15:100124250..100127287,4	K562	blood:
2	chr15:100105377..100107191-chr15:100123096..100125777,2	K562	blood:
3	chr15:100124558..100126222-chr15:100127468..100129405,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000068305	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915926	chr15:99519820-100138705	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv817289	chr15:99621061-100138705	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv431411	chr15:99621061-100143999	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
7	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
8	nsv904558	chr15:100019382-100171684	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	esv1798883	chr15:100124483-100153969	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:100107400-100134200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:100107400-100134200	Weak transcription	Pancreas	Pancrea
3	chr15:100107800-100124800	Weak transcription	Fetal Stomach	stomach
4	chr15:100108000-100142000	Weak transcription	Thymus	Thymus
5	chr15:100108200-100125200	Weak transcription	Fetal Muscle Leg	muscle
6	chr15:100109000-100140200	Weak transcription	Hela-S3	cervix
7	chr15:100109600-100125800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr15:100109600-100126200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr15:100109600-100132200	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr15:100115000-100138800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:100118800-100132200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:100118800-100139800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr15:100120400-100124800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:100120400-100134200	Weak transcription	Aorta	Aorta
15	chr15:100120600-100124800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:100120600-100128400	Weak transcription	Fetal Thymus	thymus
17	chr15:100120600-100132800	Weak transcription	Left Ventricle	heart
18	chr15:100120800-100125000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr15:100120800-100125800	Weak transcription	NHDF-Ad	bronchial
20	chr15:100120800-100131200	Weak transcription	Right Ventricle	heart
21	chr15:100120800-100140200	Weak transcription	HSMM	muscle
22	chr15:100120800-100142600	Weak transcription	Ovary	ovary
23	chr15:100121000-100131200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr15:100121600-100127000	Weak transcription	Primary T cells from cord blood	blood
25	chr15:100122000-100136400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr15:100122400-100127200	ZNF genes & repeats	GM12878-XiMat	blood
27	chr15:100122600-100126200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr15:100122600-100126200	Weak transcription	Brain Substantia Nigra	brain
29	chr15:100123000-100126200	Weak transcription	Liver	Liver
30	chr15:100123000-100131600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr15:100123200-100136800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr15:100123400-100125800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr15:100123600-100125400	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr15:100123800-100131400	Weak transcription	Rectal Smooth Muscle	rectum
35	chr15:100124000-100124800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr15:100124000-100125000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr15:100124000-100125000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr15:100124000-100125800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr15:100124000-100126800	ZNF genes & repeats	Dnd41	blood
40	chr15:100124000-100128400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr15:100124400-100125000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
42	chr15:100124400-100125000	ZNF genes & repeats	A549	lung
43	chr15:100124400-100126200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr15:100124400-100127000	ZNF genes & repeats	Primary B cells from cord blood	blood
45	chr15:100124400-100127200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
46	chr15:100124400-100129000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr15:100124400-100129000	Weak transcription	Fetal Heart	heart
48	chr15:100124600-100124800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr15:100124600-100124800	ZNF genes & repeats	Brain Hippocampus Middle	brain
50	chr15:100124600-100124800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet

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