Variant report

Variant	rs541190767
Chromosome Location	chr9:108537332-108537333
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv615116	chr9:108468129-108546438	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv615119	chr9:108535272-108537374	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	n/a
5	esv1829675	chr9:108535272-108538044	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	n/a
6	esv1837202	chr9:108535272-108538044	ZNF genes & repeats Weak transcription Enhancers Strong transcription	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	n/a
7	esv1798719	chr9:108535272-108546438	Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	n/a
8	nsv615120	chr9:108535330-108537702	Strong transcription Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	n/a
9	nsv1041073	chr9:108535813-108731343	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
10	esv20657	chr9:108536106-108538162	Strong transcription Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	n/a
11	nsv508558	chr9:108536115-108611087	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	n/a
12	nsv615121	chr9:108536172-108537702	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	n/a
13	esv1831948	chr9:108536180-108538044	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region miRNA target site	n/a	inside rSNPs	n/a
14	esv1832798	chr9:108536180-108538044	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region miRNA target site	n/a	inside rSNPs	n/a
15	nsv615123	chr9:108536207-108537374	Enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	n/a
16	nsv615124	chr9:108536207-108537526	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region miRNA target site	n/a	inside rSNPs	n/a
17	nsv615125	chr9:108536207-108537826	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	n/a
18	nsv615126	chr9:108536207-108538044	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	n/a
19	nsv615127	chr9:108536309-108537374	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region miRNA target site	n/a	inside rSNPs	n/a
20	nsv615128	chr9:108536309-108537475	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	n/a
21	nsv615129	chr9:108536511-108537475	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
22	nsv615130	chr9:108536511-108537526	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
23	nsv615131	chr9:108536511-108537702	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
24	esv1796913	chr9:108536511-108538044	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
25	esv1798343	chr9:108536511-108538044	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
26	esv1817991	chr9:108536511-108538044	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
27	esv1834016	chr9:108536511-108538044	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
28	nsv615132	chr9:108536511-108538044	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
29	nsv615133	chr9:108536511-108546438	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
30	nsv615134	chr9:108536564-108546438	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
31	nsv615135	chr9:108536712-108537702	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
32	nsv615136	chr9:108536712-108537826	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
33	nsv615137	chr9:108536712-108538044	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
34	esv1846655	chr9:108536712-108569642	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
35	nsv615138	chr9:108536868-108538044	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
36	nsv615139	chr9:108536928-108546438	Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108514000-108540000	Weak transcription	HSMMtube	muscle
2	chr9:108515200-108545000	Weak transcription	K562	blood
3	chr9:108515200-108560600	Weak transcription	Ovary	ovary
4	chr9:108515600-108538600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:108517800-108538400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:108520600-108546400	Weak transcription	Fetal Intestine Small	intestine
7	chr9:108521000-108538400	Weak transcription	Primary B cells from cord blood	blood
8	chr9:108530400-108552600	Weak transcription	Pancreas	Pancrea
9	chr9:108534400-108538400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr9:108534400-108538400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr9:108534400-108539600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr9:108534600-108538400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr9:108534800-108538600	Weak transcription	Fetal Heart	heart
14	chr9:108535000-108540800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr9:108535800-108538600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:108536000-108539200	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr9:108536600-108538200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr9:108536600-108538200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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