Variant report

Variant	rs541220182
Chromosome Location	chr4:148703772-148703773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

miRNA name	Chromosome Location	mirBase accession
hsa-miR-4799-5p	chr4:148703755-148703776	MIMAT0019976

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv880242	chr4:148659137-148727355	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	esv3414867	chr4:148703352-148707250	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148694800-148708400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:148695400-148707400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:148695600-148706400	Weak transcription	Fetal Stomach	stomach
4	chr4:148697000-148706400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr4:148698200-148708800	Weak transcription	Pancreas	Pancrea
6	chr4:148698800-148708400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr4:148699400-148708200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr4:148699800-148706600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:148700600-148703800	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr4:148700800-148708000	Weak transcription	Right Ventricle	heart
11	chr4:148701600-148706400	Weak transcription	Thymus	Thymus
12	chr4:148701600-148706600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr4:148701800-148704000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr4:148701800-148716800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr4:148702000-148706400	Weak transcription	Fetal Thymus	thymus
16	chr4:148702000-148707200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr4:148702000-148707400	Weak transcription	Gastric	stomach
18	chr4:148702000-148707400	Weak transcription	Psoas Muscle	Psoas
19	chr4:148702000-148707800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr4:148702000-148709600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr4:148702000-148710200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr4:148702000-148714600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr4:148702200-148707000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr4:148702200-148707000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr4:148702200-148707400	Weak transcription	Aorta	Aorta
26	chr4:148702200-148707400	Weak transcription	Lung	lung
27	chr4:148702200-148707400	Weak transcription	Right Atrium	heart
28	chr4:148702400-148706400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr4:148702600-148706600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr4:148703000-148704000	Enhancers	HUVEC	blood vessel
31	chr4:148703200-148703800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr4:148703200-148703800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr4:148703200-148703800	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr4:148703200-148703800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr4:148703200-148703800	Enhancers	Fetal Heart	heart
36	chr4:148703200-148703800	Enhancers	Fetal Lung	lung
37	chr4:148703200-148703800	Enhancers	Ovary	ovary
38	chr4:148703200-148703800	Enhancers	Small Intestine	intestine
39	chr4:148703200-148703800	Flanking Active TSS	A549	lung
40	chr4:148703200-148703800	Enhancers	Hela-S3	cervix
41	chr4:148703200-148703800	Flanking Active TSS	NH-A	brain
42	chr4:148703200-148703800	Enhancers	NHDF-Ad	bronchial
43	chr4:148703200-148704000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr4:148703200-148704000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr4:148703200-148704000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr4:148703200-148704000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr4:148703200-148704000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr4:148703200-148704000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr4:148703200-148704000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr4:148703200-148704000	Enhancers	Colon Smooth Muscle	Colon

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