Variant report

Variant rs541245
Chromosome Location chr11:57545948-57545949
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:116 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:57538400-57546000 Enhancers Small Intestine intestine
2 chr11:57538400-57549800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr11:57539600-57552000 Enhancers Placenta Placenta
4 chr11:57541600-57550400 Enhancers Placenta Amnion Placenta Amnion
5 chr11:57541800-57549000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
6 chr11:57542400-57546000 Flanking Active TSS HUVEC blood vessel
7 chr11:57542400-57548800 Enhancers H1 Cell Line embryonic stem cell
8 chr11:57542600-57546000 Flanking Active TSS HSMM muscle
9 chr11:57542600-57549200 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr11:57542600-57550600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
11 chr11:57542800-57546000 Flanking Active TSS Rectal Mucosa Donor 29 rectum
12 chr11:57542800-57546200 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
13 chr11:57542800-57546600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
14 chr11:57543000-57546000 Flanking Active TSS Fetal Lung lung
15 chr11:57543000-57547200 Flanking Active TSS Rectal Smooth Muscle rectum
16 chr11:57543000-57547400 Flanking Active TSS Stomach Smooth Muscle stomach
17 chr11:57543000-57547800 Enhancers Fetal Thymus thymus
18 chr11:57543000-57551200 Enhancers Pancreas Pancrea
19 chr11:57543400-57549000 Enhancers Primary T cells from cord blood blood
20 chr11:57543600-57547400 Enhancers Esophagus oesophagus
21 chr11:57543800-57546000 Enhancers Breast Myoepithelial Primary Cells Breast
22 chr11:57543800-57546200 Enhancers Pancreatic Islets Pancreatic Islet
23 chr11:57543800-57548600 Enhancers Fetal Adrenal Gland Adrenal Gland
24 chr11:57544000-57546000 Flanking Active TSS HepG2 liver
25 chr11:57544000-57546000 Flanking Active TSS HSMMtube muscle
26 chr11:57544000-57546200 Weak transcription Primary B cells from cord blood blood
27 chr11:57544400-57547200 Enhancers Fetal Muscle Trunk muscle
28 chr11:57544400-57550000 Weak transcription Primary monocytes fromperipheralblood blood
29 chr11:57544600-57547000 Flanking Active TSS Adipose Nuclei Adipose
30 chr11:57544600-57547200 Flanking Active TSS Rectal Mucosa Donor 31 rectum
31 chr11:57544600-57547600 Flanking Active TSS iPS-20b Cell Line embryonic stem cell
32 chr11:57544800-57547000 Enhancers Thymus Thymus
33 chr11:57544800-57547200 Enhancers Dnd41 blood
34 chr11:57544800-57547400 Flanking Active TSS Brain Hippocampus Middle brain
35 chr11:57545000-57546000 Flanking Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr11:57545000-57546000 Flanking Active TSS Duodenum Smooth Muscle Duodenum
37 chr11:57545000-57546200 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
38 chr11:57545000-57546200 Flanking Active TSS Skeletal Muscle Male skeletal muscle
39 chr11:57545000-57547000 Flanking Active TSS Liver Liver
40 chr11:57545000-57547200 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
41 chr11:57545000-57547200 Enhancers Primary hematopoietic stem cells short term culture blood
42 chr11:57545000-57547200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
43 chr11:57545000-57547200 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
44 chr11:57545000-57547400 Flanking Active TSS HUES6 Cell Line embryonic stem cell
45 chr11:57545000-57547600 Flanking Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
46 chr11:57545200-57546000 Flanking Active TSS iPS-15b Cell Line embryonic stem cell
47 chr11:57545200-57546000 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
48 chr11:57545200-57546000 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
49 chr11:57545200-57546000 Flanking Active TSS Colon Smooth Muscle Colon
50 chr11:57545200-57546000 Flanking Active TSS Fetal Heart heart

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