Variant report

Variant	rs541270146
Chromosome Location	chr12:21967146-21967147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043936	chr12:21562673-21979030	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv557741	chr12:21578559-22169854	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1051073	chr12:21910875-22271209	Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv470275	chr12:21938544-22126314	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv1803832	chr12:21966362-21972830	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21953400-21971600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr12:21953800-21981000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr12:21954200-21972200	Weak transcription	Fetal Kidney	kidney
4	chr12:21954400-21980600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr12:21955800-21971600	Weak transcription	Ovary	ovary
6	chr12:21955800-21973600	Weak transcription	Right Ventricle	heart
7	chr12:21956800-21968400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:21957200-21971200	Strong transcription	Skeletal Muscle Female	skeletal muscle
9	chr12:21958200-21968200	Weak transcription	Adipose Nuclei	Adipose
10	chr12:21958200-21969200	Weak transcription	Left Ventricle	heart
11	chr12:21958200-21981200	Weak transcription	Fetal Muscle Leg	muscle
12	chr12:21958400-21980000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr12:21958400-22003000	Weak transcription	Psoas Muscle	Psoas
14	chr12:21963800-21971800	Weak transcription	Fetal Lung	lung
15	chr12:21965000-21971600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr12:21966000-21973000	Weak transcription	Gastric	stomach
17	chr12:21966200-21967200	Enhancers	Liver	Liver
18	chr12:21966200-21967400	Enhancers	Fetal Heart	heart
19	chr12:21966600-21967600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr12:21966800-21967800	Enhancers	Pancreatic Islets	Pancreatic Islet

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