Variant report

Variant	rs541275199
Chromosome Location	chr5:7907444-7907445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916892	chr5:7634377-8158890	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv949492	chr5:7682909-7953909	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv533983	chr5:7701457-8275379	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv597005	chr5:7860404-8093077	Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv427707	chr5:7866234-7966019	Strong transcription Active TSS Genic enhancers Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv508345	chr5:7890892-7933471	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	esv3468759	chr5:7907443-7908179	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:7874000-7909200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr5:7878600-7911800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:7895400-7909600	Weak transcription	Fetal Heart	heart
4	chr5:7899600-7910000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr5:7899600-7912000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr5:7899800-7909200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr5:7899800-7909200	Weak transcription	Esophagus	oesophagus
8	chr5:7900000-7909600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:7900000-7914600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:7900600-7909200	Weak transcription	Gastric	stomach
11	chr5:7902200-7909000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr5:7902400-7907800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr5:7902400-7907800	Weak transcription	Psoas Muscle	Psoas
14	chr5:7902400-7909000	Weak transcription	Aorta	Aorta
15	chr5:7902400-7909000	Weak transcription	Right Ventricle	heart
16	chr5:7902400-7909000	Weak transcription	K562	blood
17	chr5:7902400-7910200	Weak transcription	Fetal Brain Male	brain
18	chr5:7902400-7910800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr5:7902400-7911200	Weak transcription	Fetal Kidney	kidney
20	chr5:7902800-7907600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr5:7902800-7911200	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr5:7903400-7908200	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr5:7903400-7908200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr5:7903400-7909000	Weak transcription	Colonic Mucosa	Colon
25	chr5:7903400-7909200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr5:7903400-7911000	Weak transcription	Fetal Thymus	thymus
27	chr5:7903600-7908200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr5:7903600-7909000	Weak transcription	Brain Angular Gyrus	brain
29	chr5:7903600-7909200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr5:7903600-7916000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr5:7903800-7907600	Weak transcription	GM12878-XiMat	blood
32	chr5:7903800-7907800	Weak transcription	Primary B cells from peripheral blood	blood
33	chr5:7903800-7913600	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr5:7904000-7907600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr5:7904000-7907600	Weak transcription	Brain Cingulate Gyrus	brain
36	chr5:7904000-7907800	Weak transcription	Duodenum Mucosa	Duodenum
37	chr5:7904000-7908000	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr5:7904000-7908800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr5:7904000-7909000	Weak transcription	Lung	lung
40	chr5:7904000-7909000	Weak transcription	Spleen	Spleen
41	chr5:7904000-7911400	Weak transcription	Small Intestine	intestine
42	chr5:7904200-7907800	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr5:7904200-7909000	Weak transcription	Placenta	Placenta
44	chr5:7904200-7909000	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr5:7904200-7909800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr5:7904200-7910800	Weak transcription	Thymus	Thymus
47	chr5:7904200-7912000	Weak transcription	Pancreas	Pancrea
48	chr5:7904200-7912200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr5:7904400-7907800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr5:7904400-7907800	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links