Variant report

Variant	rs541291632
Chromosome Location	chr12:105819540-105819541
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899501	chr12:105819046-105950801	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105791000-105820200	Weak transcription	Pancreas	Pancrea
2	chr12:105812800-105821400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:105812800-105821600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr12:105813000-105819800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr12:105813000-105832400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr12:105813400-105823400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr12:105813600-105821600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr12:105816200-105820200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr12:105816200-105825400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr12:105817000-105825400	Weak transcription	HSMMtube	muscle
11	chr12:105817400-105821200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr12:105817600-105821200	Weak transcription	HUVEC	blood vessel
13	chr12:105817600-105821200	Weak transcription	NHEK	skin
14	chr12:105817600-105821400	Weak transcription	HMEC	breast
15	chr12:105817800-105827200	Weak transcription	Hela-S3	cervix
16	chr12:105819200-105819800	Enhancers	Fetal Muscle Leg	muscle
17	chr12:105819200-105820000	Enhancers	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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