Variant report

Variant	rs541296897
Chromosome Location	chr15:40416025-40416026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv428635	chr15:40274500-40436293	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv3364812	chr15:40414858-40427614	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40402000-40418600	Weak transcription	Right Atrium	heart
2	chr15:40408400-40416800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:40408400-40417000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr15:40408600-40416600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr15:40411400-40416600	Weak transcription	NHEK	skin
6	chr15:40414600-40416600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr15:40414800-40416600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:40415000-40416600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr15:40415200-40418000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr15:40415400-40416200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr15:40415400-40416800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr15:40415400-40416800	Weak transcription	HMEC	breast
13	chr15:40415600-40416200	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr15:40415600-40416400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:40415600-40416600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:40415600-40416600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr15:40415600-40416800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr15:40415600-40417000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr15:40416000-40416400	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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