Variant report

Variant	rs541305412
Chromosome Location	chr3:51344907-51344908
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005858	chr3:51090373-51444027	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv536569	chr3:51090373-51444027	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
4	esv20206	chr3:51344873-51415825	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51315400-51350000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:51339800-51347200	Weak transcription	Brain Germinal Matrix	brain
3	chr3:51340000-51370800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:51341600-51347200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:51341600-51372000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:51342000-51348000	Weak transcription	Brain Angular Gyrus	brain
7	chr3:51342200-51347200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:51342200-51349400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr3:51342200-51352400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr3:51342200-51353600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:51342200-51355000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr3:51343600-51345600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:51343800-51354800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr3:51344200-51347200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr3:51344200-51371800	Weak transcription	Brain Substantia Nigra	brain
16	chr3:51344400-51345000	ZNF genes & repeats	Fetal Brain Male	brain
17	chr3:51344600-51345000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
18	chr3:51344600-51345200	ZNF genes & repeats	Aorta	Aorta
19	chr3:51344600-51345200	ZNF genes & repeats	Fetal Brain Female	brain
20	chr3:51344600-51347400	Weak transcription	Brain Anterior Caudate	brain
21	chr3:51344800-51347000	Weak transcription	Brain Hippocampus Middle	brain

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