Variant report

Variant	rs541331357
Chromosome Location	chr11:32448686-32448687
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:32447031..32449133-chr11:32603580..32605616,2	K562	blood:
2	chr11:32420914..32422943-chr11:32448387..32450097,2	K562	blood:
3	chr11:32413863..32417759-chr11:32446575..32449998,5	K562	blood:

Variant related genes	Relation type
ENSG00000149100	Chromatin interaction
ENSG00000184937	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1038188	chr11:32410305-32449799	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1044547	chr11:32435753-32465233	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv2753303	chr11:32447324-32494924	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1051559	chr11:32447347-32465233	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32447600-32448800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr11:32447600-32448800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
3	chr11:32447600-32449200	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:32447600-32449200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:32447600-32449800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
6	chr11:32447600-32450000	Bivalent Enhancer	Fetal Heart	heart
7	chr11:32447800-32449000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
8	chr11:32447800-32449800	Bivalent Enhancer	Fetal Brain Male	brain
9	chr11:32447800-32450000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
10	chr11:32448000-32448800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
11	chr11:32448000-32448800	Weak transcription	Fetal Kidney	kidney
12	chr11:32448000-32449000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
13	chr11:32448000-32449000	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:32448000-32449000	Bivalent Enhancer	Placenta	Placenta
15	chr11:32448000-32449600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
16	chr11:32448000-32450000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
17	chr11:32448000-32450000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
18	chr11:32448200-32448800	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:32448200-32448800	Bivalent/Poised TSS	Left Ventricle	heart
20	chr11:32448200-32448800	Active TSS	Right Ventricle	heart
21	chr11:32448200-32448800	Bivalent Enhancer	Spleen	Spleen
22	chr11:32448200-32448800	Active TSS	K562	blood
23	chr11:32448200-32449000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
24	chr11:32448200-32449000	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr11:32448200-32449000	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
26	chr11:32448200-32449000	Bivalent Enhancer	Fetal Lung	lung
27	chr11:32448200-32449000	Active TSS	Right Atrium	heart
28	chr11:32448200-32449200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
29	chr11:32448200-32449200	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
30	chr11:32448200-32449600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
31	chr11:32448200-32449600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
32	chr11:32448200-32449800	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
33	chr11:32448200-32450000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
34	chr11:32448400-32448800	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr11:32448400-32448800	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
36	chr11:32448400-32448800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr11:32448400-32448800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr11:32448400-32448800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr11:32448400-32448800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:32448400-32448800	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
41	chr11:32448400-32448800	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
42	chr11:32448400-32448800	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
43	chr11:32448400-32449000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr11:32448400-32449000	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr11:32448400-32449000	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr11:32448400-32449000	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
47	chr11:32448400-32449000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr11:32448400-32449000	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
49	chr11:32448400-32449200	Flanking Active TSS	Primary hematopoietic stem cells	blood
50	chr11:32448400-32449200	Flanking Bivalent TSS/Enh	Thymus	Thymus

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