Variant report

Variant	rs541342278
Chromosome Location	chr13:110663857-110663858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110658379..110661796-chr13:110663475..110666715,3	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1842097	chr13:110644990-110680944	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv901004	chr13:110653666-110682916	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv11075	chr13:110663770-110667708	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110654000-110664000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr13:110659200-110664000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr13:110659200-110664200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:110659200-110669800	Weak transcription	Pancreas	Pancrea
5	chr13:110660200-110664000	Weak transcription	Hela-S3	cervix
6	chr13:110661000-110666800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr13:110661200-110669400	Enhancers	HSMM	muscle
8	chr13:110661600-110664600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr13:110662000-110664200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr13:110662200-110664200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr13:110662200-110666000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr13:110662400-110664000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr13:110662400-110664000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr13:110662600-110666400	Enhancers	HMEC	breast
15	chr13:110662600-110668600	Enhancers	HSMMtube	muscle
16	chr13:110662800-110664800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr13:110662800-110666200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr13:110662800-110671000	Enhancers	NHEK	skin
19	chr13:110663000-110664200	Enhancers	NH-A	brain
20	chr13:110663000-110665800	Enhancers	NHLF	lung
21	chr13:110663000-110666200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr13:110663200-110664000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr13:110663200-110664200	Enhancers	Osteobl	bone
24	chr13:110663200-110667000	Weak transcription	Left Ventricle	heart
25	chr13:110663400-110664400	Weak transcription	Right Atrium	heart
26	chr13:110663400-110664600	Flanking Active TSS	A549	lung
27	chr13:110663400-110665600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr13:110663400-110665600	Enhancers	NHDF-Ad	bronchial
29	chr13:110663400-110666800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr13:110663400-110666800	Weak transcription	Fetal Heart	heart
31	chr13:110663400-110667000	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr13:110663400-110670600	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr13:110663600-110664000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr13:110663600-110664000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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