Variant report

Variant	rs541359719
Chromosome Location	chr12:32154402-32154403
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C12orf35-4	chr12:32154358-32155125	NONHSAT027600

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv558100	chr12:31866833-32185924	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1045464	chr12:31869888-32183792	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv541447	chr12:31869888-32183792	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	esv3363806	chr12:31872264-32410283	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	esv3508621	chr12:31872654-32410593	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	esv3508622	chr12:31872654-32410593	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
7	esv3430326	chr12:32142734-32216569	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	esv3410287	chr12:32142734-32219420	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv521398	chr12:32148915-32156716	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv976030	chr12:32153446-32307541	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv983498	chr12:32153446-32388092	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32134800-32155400	Weak transcription	NHDF-Ad	bronchial
2	chr12:32135000-32156000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr12:32135000-32156400	Weak transcription	Gastric	stomach
4	chr12:32136000-32155000	Weak transcription	HSMMtube	muscle
5	chr12:32136200-32155400	Weak transcription	Osteobl	bone
6	chr12:32137200-32158600	Weak transcription	HUVEC	blood vessel
7	chr12:32140200-32156200	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr12:32140800-32156600	Strong transcription	Thymus	Thymus
9	chr12:32141400-32154800	Strong transcription	Fetal Intestine Large	intestine
10	chr12:32141400-32154800	Strong transcription	Fetal Intestine Small	intestine
11	chr12:32141400-32156200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr12:32141800-32155000	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr12:32142200-32155800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr12:32142600-32155000	Strong transcription	Liver	Liver
15	chr12:32143000-32154800	Strong transcription	H1 Cell Line	embryonic stem cell
16	chr12:32143000-32154800	Strong transcription	Adipose Nuclei	Adipose
17	chr12:32143200-32156200	Strong transcription	Primary T cells from cord blood	blood
18	chr12:32143800-32154800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr12:32143800-32158400	Weak transcription	Fetal Heart	heart
20	chr12:32144000-32155600	Weak transcription	Small Intestine	intestine
21	chr12:32144200-32154800	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr12:32144400-32155800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr12:32145000-32154800	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr12:32145400-32154800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr12:32145800-32154800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr12:32145800-32154800	Strong transcription	Left Ventricle	heart
27	chr12:32145800-32155600	Weak transcription	Stomach Mucosa	stomach
28	chr12:32146600-32154800	Strong transcription	Ovary	ovary
29	chr12:32146800-32155000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr12:32147200-32154800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr12:32147200-32154800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr12:32147200-32154800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
33	chr12:32147200-32154800	Strong transcription	Fetal Muscle Leg	muscle
34	chr12:32147200-32154800	Strong transcription	Spleen	Spleen
35	chr12:32148000-32154800	Strong transcription	Placenta	Placenta
36	chr12:32148600-32154800	Strong transcription	Duodenum Smooth Muscle	Duodenum
37	chr12:32148600-32155000	Strong transcription	Brain Hippocampus Middle	brain
38	chr12:32148800-32155800	Weak transcription	Colonic Mucosa	Colon
39	chr12:32149000-32155800	Strong transcription	Fetal Brain Female	brain
40	chr12:32149400-32155600	Weak transcription	Fetal Brain Male	brain
41	chr12:32149800-32154800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr12:32150400-32154800	Strong transcription	Fetal Lung	lung
43	chr12:32151000-32156200	Weak transcription	Rectal Smooth Muscle	rectum
44	chr12:32151200-32155400	Weak transcription	HSMM	muscle
45	chr12:32151200-32155600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr12:32151200-32155600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr12:32151200-32155600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr12:32151200-32156000	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr12:32151200-32156000	Weak transcription	Psoas Muscle	Psoas
50	chr12:32151200-32158000	Weak transcription	GM12878-XiMat	blood

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