Variant report

Variant	rs541361476
Chromosome Location	chr7:128256781-128256782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427806	chr7:128179989-128428182	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv970938	chr7:128256300-128300276	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128200000-128258800	Weak transcription	Right Ventricle	heart
2	chr7:128204800-128258800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr7:128223800-128258800	Weak transcription	Lung	lung
4	chr7:128226400-128258800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:128233200-128258800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:128233200-128258800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:128233400-128258400	Weak transcription	Thymus	Thymus
8	chr7:128233400-128258600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:128233400-128258800	Weak transcription	Aorta	Aorta
10	chr7:128233400-128258800	Weak transcription	Esophagus	oesophagus
11	chr7:128233400-128258800	Weak transcription	Spleen	Spleen
12	chr7:128233400-128259000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr7:128233400-128259000	Weak transcription	Colon Smooth Muscle	Colon
14	chr7:128233400-128259600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr7:128233400-128272000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:128233600-128258800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr7:128233800-128257600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr7:128233800-128258800	Weak transcription	Fetal Brain Female	brain
19	chr7:128234600-128257600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr7:128234600-128258800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr7:128234600-128258800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr7:128234600-128258800	Weak transcription	Gastric	stomach
23	chr7:128234600-128271200	Weak transcription	Fetal Lung	lung
24	chr7:128235600-128258800	Weak transcription	Pancreas	Pancrea
25	chr7:128237600-128258600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr7:128237800-128290400	Weak transcription	HepG2	liver
27	chr7:128238200-128258800	Weak transcription	Ovary	ovary
28	chr7:128239200-128287200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr7:128239200-128296400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr7:128239400-128258800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr7:128239400-128271200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr7:128239600-128258800	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr7:128239600-128262400	Weak transcription	Brain Hippocampus Middle	brain
34	chr7:128239800-128257600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr7:128239800-128258800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr7:128240000-128258800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr7:128240200-128269400	Weak transcription	Primary B cells from cord blood	blood
38	chr7:128240400-128258800	Weak transcription	Primary T cells from cord blood	blood
39	chr7:128242600-128292800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr7:128246600-128284800	Weak transcription	Stomach Mucosa	stomach
41	chr7:128247000-128258800	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr7:128249600-128256800	Strong transcription	Dnd41	blood
43	chr7:128249600-128256800	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr7:128249600-128257200	Weak transcription	GM12878-XiMat	blood
45	chr7:128249600-128257600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr7:128249600-128257600	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr7:128249600-128257800	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr7:128249600-128257800	Weak transcription	HMEC	breast
49	chr7:128249600-128257800	Weak transcription	K562	blood
50	chr7:128249600-128258000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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