Variant report

Variant	rs541382178
Chromosome Location	chr5:57380751-57380752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033051	chr5:57380218-57471801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57374000-57383800	Weak transcription	Ovary	ovary
2	chr5:57375000-57382800	Weak transcription	Fetal Lung	lung
3	chr5:57377000-57381400	Weak transcription	Hela-S3	cervix
4	chr5:57377000-57381600	Weak transcription	HMEC	breast
5	chr5:57377200-57381200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:57378800-57384800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:57379000-57381600	Weak transcription	HSMMtube	muscle
8	chr5:57380200-57383400	Enhancers	A549	lung
9	chr5:57380400-57386800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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