Variant report

Variant	rs541432728
Chromosome Location	chr9:8338090-8338091
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv892224	chr9:8263737-8338431	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	miRNA target site	n/a	inside rSNPs	diseases
4	esv2830193	chr9:8337939-8345923	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8312200-8338200	Weak transcription	Brain Angular Gyrus	brain
2	chr9:8323400-8341600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:8323800-8341600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:8324000-8345000	Weak transcription	Fetal Brain Male	brain
5	chr9:8328200-8338600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:8328800-8338200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr9:8329800-8339800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:8330000-8338600	Weak transcription	Brain Substantia Nigra	brain
9	chr9:8330000-8348600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr9:8330200-8338600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr9:8330200-8339800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr9:8330200-8339800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr9:8330200-8340200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr9:8330200-8340400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr9:8330200-8340800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:8330200-8342200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr9:8330200-8364200	Weak transcription	Brain Anterior Caudate	brain
18	chr9:8330400-8338200	Weak transcription	Brain Hippocampus Middle	brain
19	chr9:8330400-8338200	Weak transcription	Fetal Stomach	stomach
20	chr9:8330400-8340000	Weak transcription	Placenta	Placenta
21	chr9:8331400-8342000	Weak transcription	Fetal Kidney	kidney
22	chr9:8336600-8338200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr9:8336800-8341800	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr9:8337200-8340400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr9:8337400-8339000	Enhancers	Fetal Intestine Large	intestine
26	chr9:8337400-8339000	Enhancers	Fetal Intestine Small	intestine
27	chr9:8337400-8339000	Enhancers	Pancreas	Pancrea
28	chr9:8337400-8339600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:8337400-8339600	Strong transcription	Brain Germinal Matrix	brain
30	chr9:8337400-8340200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr9:8337400-8340200	Strong transcription	Brain Cingulate Gyrus	brain
32	chr9:8337400-8340600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr9:8337400-8340800	Strong transcription	Fetal Brain Female	brain
34	chr9:8337400-8341800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr9:8337600-8338400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr9:8337600-8338800	Enhancers	Fetal Lung	lung
37	chr9:8337600-8340000	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr9:8337600-8340400	Strong transcription	Primary hematopoietic stem cells	blood
39	chr9:8337800-8338200	Strong transcription	Fetal Muscle Leg	muscle
40	chr9:8337800-8339000	Enhancers	Adipose Nuclei	Adipose
41	chr9:8337800-8339000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr9:8337800-8339400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr9:8337800-8339600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr9:8337800-8339600	Enhancers	Ovary	ovary
45	chr9:8338000-8338600	Strong transcription	Dnd41	blood
46	chr9:8338000-8339000	Enhancers	Aorta	Aorta
47	chr9:8338000-8339200	Enhancers	Liver	Liver
48	chr9:8338000-8339600	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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