Variant report

Variant	rs541436243
Chromosome Location	chr7:12070255-12070256
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2758103	chr7:11927239-12109419	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2759510	chr7:11927239-12109419	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv830906	chr7:12001764-12177869	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv606222	chr7:12023864-12084381	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv1023608	chr7:12064114-12247520	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv967454	chr7:12069700-12081150	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12067600-12072600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:12069600-12070400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr7:12069600-12072200	Enhancers	NH-A	brain
4	chr7:12069600-12072600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr7:12069600-12072800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:12069600-12072800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr7:12069800-12071000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:12069800-12072800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr7:12070000-12070800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr7:12070000-12071400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:12070000-12071600	Enhancers	NHLF	lung
12	chr7:12070000-12071800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr7:12070000-12071800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr7:12070200-12071000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr7:12070200-12071200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr7:12070200-12071400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:12070200-12071400	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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