Variant report

Variant	rs541482445
Chromosome Location	chr11:73307727-73307728
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73307696..73311155-chr11:73356118..73358808,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000021300	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv20896	chr11:73306779-73309297	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73250000-73307800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr11:73266600-73307800	Weak transcription	Fetal Intestine Small	intestine
3	chr11:73277400-73307800	Weak transcription	Fetal Intestine Large	intestine
4	chr11:73281600-73307800	Weak transcription	Hela-S3	cervix
5	chr11:73288400-73307800	Weak transcription	Aorta	Aorta
6	chr11:73290000-73308000	Weak transcription	Primary B cells from cord blood	blood
7	chr11:73290400-73308000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr11:73294200-73307800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:73304600-73307800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr11:73304600-73307800	Enhancers	Brain Substantia Nigra	brain
11	chr11:73305200-73307800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr11:73305400-73307800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:73305400-73307800	Weak transcription	NHDF-Ad	bronchial
14	chr11:73306000-73308000	Enhancers	Primary T cells from cord blood	blood
15	chr11:73306000-73308200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr11:73306200-73307800	Weak transcription	A549	lung
17	chr11:73306200-73307800	Active TSS	GM12878-XiMat	blood
18	chr11:73306400-73307800	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr11:73306600-73307800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:73306600-73308400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:73306800-73308000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:73306800-73308400	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr11:73307000-73307800	Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr11:73307000-73307800	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr11:73307000-73307800	Enhancers	Muscle Satellite Cultured Cells	--
26	chr11:73307000-73307800	Active TSS	Brain Anterior Caudate	brain
27	chr11:73307000-73307800	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr11:73307000-73307800	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr11:73307000-73308000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
30	chr11:73307000-73308000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr11:73307000-73308000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:73307000-73308000	Enhancers	Colon Smooth Muscle	Colon
33	chr11:73307000-73308000	Enhancers	Fetal Thymus	thymus
34	chr11:73307000-73308000	Enhancers	Right Ventricle	heart
35	chr11:73307000-73308200	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr11:73307000-73308200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr11:73307000-73308400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr11:73307000-73308400	Enhancers	Small Intestine	intestine
39	chr11:73307200-73307800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr11:73307200-73308000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr11:73307200-73308000	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr11:73307200-73308200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr11:73307200-73308600	Flanking Active TSS	Dnd41	blood
44	chr11:73307400-73307800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr11:73307400-73308000	Enhancers	Liver	Liver
46	chr11:73307400-73308000	Enhancers	K562	blood
47	chr11:73307400-73308200	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr11:73307400-73308200	Flanking Active TSS	Fetal Brain Female	brain
49	chr11:73307400-73308400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
50	chr11:73307400-73308400	Flanking Active TSS	Brain Germinal Matrix	brain

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