Variant report

Variant	rs541494240
Chromosome Location	chr7:97656830-97656831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:154695219..154695874-chr7:97656418..97657125,2	MCF-7	breast:
2	chr7:97656294..97658783-chr7:97701191..97703989,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031371	chr7:97312452-98070538	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3500384	chr7:97527787-98015382	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	esv3500386	chr7:97527787-98015382	Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1017481	chr7:97597641-98041043	Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv539031	chr7:97597641-98041043	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv8181	chr7:97652917-97657935	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv819595	chr7:97653187-97657316	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	esv1000353	chr7:97653581-97663618	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1019531	chr7:97653880-98034129	Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
10	nsv539032	chr7:97653880-98034129	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	esv3529015	chr7:97654223-97658147	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3477405	chr7:97654416-97659314	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3529014	chr7:97654666-97658664	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3529016	chr7:97654966-97658564	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3529017	chr7:97654966-97658564	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3477404	chr7:97655300-97657587	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3477403	chr7:97655427-97658147	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3477402	chr7:97655683-97657663	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3477406	chr7:97655745-97657570	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv824225	chr7:97655747-97657118	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv824226	chr7:97655958-97657118	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv824227	chr7:97655987-97657118	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv824228	chr7:97656520-97657118	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:97649200-97668000	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links