Variant report

Variant	rs541499061
Chromosome Location	chr6:140692639-140692640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv432965	chr6:140692307-140866307	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140691800-140693000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:140692000-140692800	Enhancers	HSMMtube	muscle
3	chr6:140692000-140693600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:140692200-140692800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:140692200-140693000	Enhancers	Osteobl	bone
6	chr6:140692200-140693600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:140692200-140693600	Enhancers	NHDF-Ad	bronchial
8	chr6:140692200-140693800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:140692400-140692800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:140692400-140692800	Enhancers	Fetal Brain Male	brain
11	chr6:140692400-140693200	Weak transcription	NHLF	lung
12	chr6:140692400-140693400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:140692400-140693600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr6:140692400-140693800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr6:140692600-140692800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:140692600-140693600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:140692600-140693600	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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