Variant report

Variant	rs541520804
Chromosome Location	chr6:80049145-80049146
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv524012	chr6:80047861-80052589	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80040600-80050400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:80047000-80049600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:80047600-80049600	Enhancers	H1 Cell Line	embryonic stem cell
4	chr6:80047600-80050800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:80047800-80049800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:80048000-80050400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr6:80048200-80049200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr6:80048600-80049200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr6:80048600-80049200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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