Variant report

Variant	rs541521199
Chromosome Location	chr6:34991677-34991678
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv965715	chr6:34991241-34991989	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34926800-34992200	Weak transcription	Small Intestine	intestine
2	chr6:34939400-35016000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:34963600-35006600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:34979800-35002000	Weak transcription	GM12878-XiMat	blood
5	chr6:34982800-34991800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:34982800-34992200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:34983000-34991800	Weak transcription	HMEC	breast
8	chr6:34983600-34992000	Weak transcription	A549	lung
9	chr6:34983800-34992200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr6:34986000-34992200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:34986200-34991800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:34986200-34991800	Weak transcription	NHDF-Ad	bronchial
13	chr6:34986200-34991800	Weak transcription	NHLF	lung
14	chr6:34986200-34992000	Weak transcription	NHEK	skin
15	chr6:34986200-34992200	Weak transcription	Osteobl	bone
16	chr6:34986200-34996400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr6:34986200-35015000	Weak transcription	Primary B cells from peripheral blood	blood
18	chr6:34986400-35011800	Weak transcription	Dnd41	blood
19	chr6:34986600-34992400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:34986600-34993000	Weak transcription	Esophagus	oesophagus
21	chr6:34986800-35014800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:34987000-35009000	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr6:34987000-35015800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr6:34987200-34991800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr6:34987200-34992000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:34987200-34993200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:34987400-34991800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:34987400-34991800	Weak transcription	HSMM	muscle
29	chr6:34987400-34992400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr6:34987400-34998600	Weak transcription	Primary B cells from cord blood	blood
31	chr6:34987400-34999200	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr6:34987400-34999600	Weak transcription	Fetal Kidney	kidney
33	chr6:34987400-35015800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr6:34987600-34992200	Weak transcription	Fetal Brain Female	brain
35	chr6:34987800-34992000	Weak transcription	Duodenum Mucosa	Duodenum
36	chr6:34987800-34993200	Enhancers	Psoas Muscle	Psoas
37	chr6:34988000-34992000	Weak transcription	Brain Germinal Matrix	brain
38	chr6:34988000-34992600	Genic enhancers	Fetal Muscle Leg	muscle
39	chr6:34988200-34993600	Enhancers	Brain Angular Gyrus	brain
40	chr6:34988200-34994200	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr6:34988400-34992400	Weak transcription	HepG2	liver
42	chr6:34988400-34993200	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr6:34988400-34995000	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr6:34988400-34995600	Enhancers	H1 Cell Line	embryonic stem cell
45	chr6:34988600-34992400	Weak transcription	Spleen	Spleen
46	chr6:34988600-34993200	Weak transcription	Primary hematopoietic stem cells	blood
47	chr6:34988600-34999200	Enhancers	Brain Anterior Caudate	brain
48	chr6:34988800-34992400	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr6:34988800-34994400	Enhancers	Brain Substantia Nigra	brain
50	chr6:34989000-35002800	Weak transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links