Variant report

Variant	rs541522843
Chromosome Location	chr6:163825906-163825907
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:163825837..163828170-chr6:163829514..163831485,3	MCF-7	breast:
2	chr6:163804907..163807228-chr6:163823895..163826768,2	K562	blood:
3	chr6:163824877..163830472-chr6:163836413..163839637,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112531	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1791729	chr6:163814557-163836689	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv1839403	chr6:163822296-163835490	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv1793461	chr6:163822296-163836634	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv1794611	chr6:163822296-163836689	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv1796475	chr6:163822296-163836689	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv1797016	chr6:163822296-163836689	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv1801202	chr6:163822296-163836689	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv1801861	chr6:163822296-163836689	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv605193	chr6:163824864-163835490	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv605194	chr6:163824864-163836293	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv605195	chr6:163824864-163836634	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163818000-163826800	Weak transcription	Gastric	stomach
2	chr6:163818200-163826200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr6:163818200-163826800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:163818800-163826400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:163820200-163826000	Weak transcription	Brain Germinal Matrix	brain
6	chr6:163820200-163826000	Weak transcription	Fetal Brain Female	brain
7	chr6:163820200-163826800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:163820400-163826000	Weak transcription	Ovary	ovary
9	chr6:163820400-163826800	Weak transcription	GM12878-XiMat	blood
10	chr6:163820600-163826600	Weak transcription	Fetal Brain Male	brain
11	chr6:163821400-163827000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:163822400-163826200	Enhancers	Brain Substantia Nigra	brain
13	chr6:163822400-163826400	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr6:163823000-163826600	Enhancers	Brain Cingulate Gyrus	brain
15	chr6:163823000-163827000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr6:163823000-163827200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr6:163823000-163827200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:163823200-163826400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr6:163823200-163826800	Enhancers	Brain Hippocampus Middle	brain
20	chr6:163823400-163826200	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr6:163823400-163826600	Enhancers	Fetal Heart	heart
22	chr6:163823400-163826800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr6:163823400-163826800	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr6:163824000-163826800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:163824800-163826000	Enhancers	Brain Anterior Caudate	brain
26	chr6:163824800-163826600	Enhancers	Brain Angular Gyrus	brain
27	chr6:163825000-163827000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr6:163825200-163826200	Enhancers	Primary hematopoietic stem cells	blood
29	chr6:163825200-163826200	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr6:163825200-163826800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:163825200-163826800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr6:163825200-163828200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
33	chr6:163825400-163826200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr6:163825400-163826400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:163825400-163826400	Enhancers	Right Atrium	heart
36	chr6:163825400-163826600	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr6:163825400-163826800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr6:163825400-163826800	Enhancers	HSMMtube	muscle
39	chr6:163825400-163827200	Enhancers	Placenta	Placenta
40	chr6:163825400-163827400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
41	chr6:163825600-163826000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr6:163825600-163826200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr6:163825600-163826600	Enhancers	Liver	Liver
44	chr6:163825600-163826600	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr6:163825600-163826800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr6:163825600-163826800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:163825600-163826800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr6:163825600-163826800	Enhancers	Left Ventricle	heart
49	chr6:163825600-163826800	Enhancers	Right Ventricle	heart
50	chr6:163825600-163827000	Enhancers	Fetal Muscle Trunk	muscle

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