Variant report

Variant	rs541525000
Chromosome Location	chr15:49754409-49754410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49753086..49754670-chr15:49761846..49764653,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv9263	chr15:49734435-49809465	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv974574	chr15:49752716-49764974	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49750600-49754600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr15:49752400-49755000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr15:49752400-49764000	Weak transcription	HSMM	muscle
4	chr15:49752600-49755400	Enhancers	Fetal Heart	heart
5	chr15:49752600-49755800	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr15:49752600-49758200	Enhancers	NHDF-Ad	bronchial
7	chr15:49752800-49757800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:49753000-49756000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr15:49753200-49754600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:49753200-49758800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr15:49753400-49754600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr15:49753400-49755000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:49753600-49755000	Enhancers	Fetal Lung	lung
14	chr15:49753600-49756400	Enhancers	Colon Smooth Muscle	Colon
15	chr15:49753800-49754600	Weak transcription	Osteobl	bone
16	chr15:49753800-49756800	Weak transcription	Fetal Kidney	kidney
17	chr15:49753800-49758400	Weak transcription	Hela-S3	cervix
18	chr15:49754000-49755000	Weak transcription	Fetal Stomach	stomach
19	chr15:49754000-49755600	Enhancers	Ovary	ovary
20	chr15:49754200-49755000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr15:49754200-49756200	Enhancers	Rectal Smooth Muscle	rectum
22	chr15:49754200-49758600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr15:49754200-49759200	Weak transcription	Adipose Nuclei	Adipose
24	chr15:49754400-49754800	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr15:49754400-49754800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr15:49754400-49754800	Weak transcription	NHLF	lung
27	chr15:49754400-49755400	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr15:49754400-49759400	Weak transcription	HSMMtube	muscle

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