Variant report

Variant	rs541551219
Chromosome Location	chr10:118766835-118766836
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr10:118766369-118767082	SK-N-SH	brain:	n/a	chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766749-118766758 chr10:118766480-118766487 chr10:118766758-118766770 chr10:118766750-118766759
2	ZNF217	chr10:118766527-118766963	MCF-7	breast:	n/a	n/a
3	CEBPB	chr10:118766520-118766978	A549	lung:	n/a	n/a
4	FOSL1	chr10:118766572-118766939	K562	blood:	n/a	chr10:118766748-118766759 chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766749-118766758 chr10:118766758-118766770 chr10:118766750-118766759
5	FOS	chr10:118766569-118766941	K562	blood:	n/a	chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766748-118766759 chr10:118766749-118766758 chr10:118766758-118766770 chr10:118766750-118766759
6	CEBPB	chr10:118766280-118766914	K562	blood:	n/a	n/a
7	TCF12	chr10:118766490-118766998	ECC-1	luminal epithelium:	n/a	n/a
8	YY1	chr10:118766671-118766897	HCT-116	colon:	n/a	n/a
9	YY1	chr10:118766669-118766949	A549	lung:	n/a	n/a
10	REST	chr10:118766558-118766884	ECC-1	luminal epithelium:	n/a	n/a
11	EP300	chr10:118766579-118766898	SK-N-SH_RA	brain:	n/a	chr10:118766750-118766759 chr10:118766749-118766758
12	CEBPB	chr10:118766520-118766925	A549	lung:	n/a	n/a
13	JUND	chr10:118766393-118767085	SK-N-SH	brain:	n/a	chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766749-118766758 chr10:118766480-118766487 chr10:118766758-118766770 chr10:118766750-118766759
14	JUN	chr10:118766104-118766974	K562	blood:	n/a	chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766749-118766758 chr10:118766480-118766487 chr10:118766758-118766770 chr10:118766750-118766759
15	NR3C1	chr10:118766644-118766867	ECC-1	luminal epithelium:	n/a	n/a
16	TEAD4	chr10:118766385-118766922	SK-N-SH	brain:	n/a	n/a
17	STAT3	chr10:118766619-118766876	MCF10A-Er-Src	breast:	n/a	chr10:118766749-118766758 chr10:118766750-118766759
18	JUND	chr10:118766606-118766885	H1-hESC	embryonic stem cell:	n/a	chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766749-118766758 chr10:118766758-118766770 chr10:118766750-118766759
19	JUN	chr10:118766272-118766979	Hela-S3	cervix:	n/a	chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766749-118766758 chr10:118766480-118766487 chr10:118766758-118766770 chr10:118766750-118766759
20	MAFF	chr10:118766223-118767132	K562	blood:	n/a	chr10:118766741-118766759
21	CEBPB	chr10:118766575-118766895	IMR90	lung:	n/a	n/a
22	FOSL2	chr10:118766481-118767089	MCF-7	breast:	n/a	chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766749-118766758 chr10:118766758-118766770 chr10:118766750-118766759
23	FOSL2	chr10:118766549-118766915	SK-N-SH	brain:	n/a	chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766749-118766758 chr10:118766758-118766770 chr10:118766750-118766759
24	RCOR1	chr10:118766631-118766944	K562	blood:	n/a	n/a
25	EP300	chr10:118766540-118766996	ECC-1	luminal epithelium:	n/a	chr10:118766750-118766759 chr10:118766749-118766758
26	SP1	chr10:118765991-118767161	HCT-116	colon:	n/a	n/a
27	FOSL2	chr10:118766628-118766863	HepG2	liver:	n/a	chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766749-118766758 chr10:118766758-118766770 chr10:118766750-118766759
28	EP300	chr10:118766546-118766926	SK-N-SH_RA	brain:	n/a	chr10:118766750-118766759 chr10:118766749-118766758
29	SP1	chr10:118765984-118767031	HCT-116	colon:	n/a	n/a
30	FOSL2	chr10:118766439-118767037	SK-N-SH	brain:	n/a	chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766749-118766758 chr10:118766480-118766487 chr10:118766758-118766770 chr10:118766750-118766759
31	MAFK	chr10:118766567-118766952	K562	blood:	n/a	chr10:118766748-118766758 chr10:118766748-118766757
32	CEBPB	chr10:118766449-118767008	HCT-116	colon:	n/a	n/a
33	USF1	chr10:118766663-118767004	A549	lung:	n/a	n/a
34	HDAC2	chr10:118766498-118766894	MCF-7	breast:	n/a	n/a
35	JUND	chr10:118766545-118767104	MCF-7	breast:	n/a	chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766749-118766758 chr10:118766758-118766770 chr10:118766750-118766759
36	GATA3	chr10:118766421-118766865	MCF-7	breast:	n/a	chr10:118766761-118766770
37	JUN	chr10:118766591-118766929	HepG2	liver:	n/a	chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766749-118766758 chr10:118766758-118766770 chr10:118766750-118766759
38	ATF3	chr10:118766577-118766978	K562	blood:	n/a	n/a
39	CEBPB	chr10:118766570-118766916	A549	lung:	n/a	n/a
40	RFX5	chr10:118766608-118766910	K562	blood:	n/a	n/a
41	NFIC	chr10:118766357-118767172	SK-N-SH	brain:	n/a	n/a
42	JUND	chr10:118766566-118766972	HepG2	liver:	n/a	chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766749-118766758 chr10:118766758-118766770 chr10:118766750-118766759
43	YY1	chr10:118766672-118767040	SK-N-SH	brain:	n/a	n/a
44	NFE2	chr10:118766595-118766919	K562	blood:	n/a	chr10:118766748-118766758 chr10:118766749-118766759 chr10:118766743-118766758
45	JUN	chr10:118766582-118766956	K562	blood:	n/a	chr10:118766750-118766758 chr10:118766759-118766769 chr10:118766760-118766768 chr10:118766749-118766759 chr10:118766748-118766760 chr10:118766761-118766772 chr10:118766751-118766758 chr10:118766749-118766758 chr10:118766758-118766770 chr10:118766750-118766759
46	IRF1	chr10:118766502-118766947	K562	blood:	n/a	chr10:118766750-118766759 chr10:118766830-118766844 chr10:118766749-118766758 chr10:118766760-118766769
47	YY1	chr10:118766559-118766916	SK-N-SH_RA	brain:	n/a	n/a
48	POLR2A	chr10:118766167-118766840	K562	blood:	n/a	n/a
49	EP300	chr10:118766456-118766950	Hela-S3	cervix:	n/a	chr10:118766750-118766759 chr10:118766749-118766758
50	MAFK	chr10:118766646-118766866	HepG2	liver:	n/a	chr10:118766748-118766758 chr10:118766748-118766757

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118763331..118765453-chr10:118765627..118768169,2	MCF-7	breast:
2	chr10:118765114..118768175-chr10:118770999..118774519,3	K562	blood:

Variant related genes	Relation type
KIAA1598	TF binding region
ENSG00000187164	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755506	chr10:118748764-118800107	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
2	esv3525989	chr10:118764562-118770560	Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	n/a
3	esv3525990	chr10:118765187-118770410	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a
4	esv3525991	chr10:118765187-118770410	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a
5	esv11358	chr10:118766138-118768926	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv947704	chr10:118766293-118767918	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118765600-118767000	Enhancers	Brain Substantia Nigra	brain
2	chr10:118765600-118767200	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr10:118766200-118767200	Flanking Active TSS	A549	lung
4	chr10:118766600-118767200	Enhancers	K562	blood
5	chr10:118766600-118768200	Weak transcription	Brain Hippocampus Middle	brain
6	chr10:118766800-118767000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr10:118766800-118767000	Enhancers	Stomach Mucosa	stomach

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