Variant report

Variant	rs541552301
Chromosome Location	chr5:177098342-177098343
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024444	chr5:176751921-177427715	Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	142 gene(s)	inside rSNPs	diseases
2	esv2752795	chr5:176898619-177488281	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
3	nsv883182	chr5:176980995-177322056	Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv969021	chr5:177060702-177111251	Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv3343343	chr5:177097871-177100719	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
6	esv3385471	chr5:177098196-177106694	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177096800-177098400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr5:177097000-177099000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr5:177097000-177099000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:177097200-177099000	Weak transcription	Thymus	Thymus
5	chr5:177097400-177099600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
6	chr5:177097400-177100600	Weak transcription	Primary B cells from cord blood	blood
7	chr5:177097600-177099200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr5:177098000-177098600	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr5:177098200-177098400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
10	chr5:177098200-177098400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:177098200-177098400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
12	chr5:177098200-177098400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr5:177098200-177098400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
14	chr5:177098200-177098400	Flanking Active TSS	Primary B cells from peripheral blood	blood
15	chr5:177098200-177098400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr5:177098200-177098400	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr5:177098200-177098400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr5:177098200-177098400	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr5:177098200-177098400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr5:177098200-177098400	Flanking Active TSS	Adipose Nuclei	Adipose
21	chr5:177098200-177098400	Enhancers	Colonic Mucosa	Colon
22	chr5:177098200-177098400	Enhancers	Fetal Brain Male	brain
23	chr5:177098200-177098400	Enhancers	Right Atrium	heart
24	chr5:177098200-177098400	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr5:177098200-177098400	Enhancers	Stomach Mucosa	stomach
26	chr5:177098200-177098400	Enhancers	A549	lung
27	chr5:177098200-177098400	Flanking Active TSS	Dnd41	blood
28	chr5:177098200-177098400	Enhancers	HUVEC	blood vessel
29	chr5:177098200-177098600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
30	chr5:177098200-177098600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
31	chr5:177098200-177098600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr5:177098200-177098600	Active TSS	Duodenum Smooth Muscle	Duodenum
33	chr5:177098200-177098600	Active TSS	Fetal Thymus	thymus
34	chr5:177098200-177098600	Active TSS	Rectal Mucosa Donor 29	rectum
35	chr5:177098200-177099200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr5:177098200-177099200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
37	chr5:177098200-177099200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr5:177098200-177099200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr5:177098200-177099200	Active TSS	Primary T cells fromperipheralblood	blood
40	chr5:177098200-177099200	Active TSS	Primary T helper cells PMA-I stimulated	--
41	chr5:177098200-177099200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr5:177098200-177099200	Active TSS	Muscle Satellite Cultured Cells	--
43	chr5:177098200-177099200	Active TSS	Brain Cingulate Gyrus	brain
44	chr5:177098200-177099200	Active TSS	Brain Hippocampus Middle	brain
45	chr5:177098200-177099200	Active TSS	Brain Inferior Temporal Lobe	brain
46	chr5:177098200-177099200	Active TSS	Fetal Brain Female	brain
47	chr5:177098200-177099200	Active TSS	Rectal Mucosa Donor 31	rectum
48	chr5:177098200-177099200	Active TSS	Stomach Smooth Muscle	stomach
49	chr5:177098200-177099200	Active TSS	NHEK	skin
50	chr5:177098200-177099400	Active TSS	H9 Cell Line	embryonic stem cell

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