Variant report

Variant	rs541557747
Chromosome Location	chr11:46141024-46141025
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46140775..46145022-chr11:46256711..46262008,9	MCF-7	breast:
2	chr11:46140376..46142887-chr11:46639092..46640615,2	MCF-7	breast:
3	chr11:46136566..46145134-chr11:46256772..46268048,26	K562	blood:
4	chr11:46139740..46148810-chr11:46253862..46264263,27	K562	blood:
5	chr11:45867136..45869190-chr11:46140608..46142204,2	K562	blood:

Variant related genes	Relation type
ENSG00000254639	Chromatin interaction
ENSG00000180423	Chromatin interaction
ENSG00000175224	Chromatin interaction
ENSG00000121671	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3324786	chr11:46140801-46143549	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	n/a
2	esv3386885	chr11:46140826-46145624	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46138200-46144200	Active TSS	Ovary	ovary
2	chr11:46138800-46141400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:46138800-46141400	Flanking Active TSS	Dnd41	blood
4	chr11:46138800-46144600	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr11:46138800-46144800	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr11:46139000-46144400	Active TSS	GM12878-XiMat	blood
7	chr11:46139200-46141200	Flanking Active TSS	Primary B cells from cord blood	blood
8	chr11:46139200-46144200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:46139400-46141200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
10	chr11:46139400-46141200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
11	chr11:46139400-46141200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:46139400-46141400	Flanking Active TSS	Primary hematopoietic stem cells	blood
13	chr11:46139400-46141400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:46139400-46144600	Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr11:46139600-46142400	Active TSS	Right Atrium	heart
16	chr11:46139600-46144000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:46139600-46144400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:46139600-46145000	Active TSS	H1 Cell Line	embryonic stem cell
19	chr11:46139800-46141200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
20	chr11:46139800-46144600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:46139800-46144600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:46139800-46144600	Active TSS	K562	blood
23	chr11:46140000-46141800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
24	chr11:46140200-46141200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
25	chr11:46140200-46141200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:46140200-46141400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
27	chr11:46140200-46141800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
28	chr11:46140200-46143800	Active TSS	Primary T cells fromperipheralblood	blood
29	chr11:46140200-46144400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr11:46140200-46144400	Active TSS	Rectal Mucosa Donor 29	rectum
31	chr11:46140200-46144400	Active TSS	NHLF	lung
32	chr11:46140200-46144600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr11:46140200-46144600	Active TSS	HUES6 Cell Line	embryonic stem cell
34	chr11:46140200-46144600	Active TSS	Brain Germinal Matrix	brain
35	chr11:46140400-46141200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
36	chr11:46140400-46141200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
37	chr11:46140400-46141200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
38	chr11:46140400-46141200	Flanking Active TSS	Liver	Liver
39	chr11:46140400-46141200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
40	chr11:46140400-46141200	Flanking Active TSS	Osteobl	bone
41	chr11:46140400-46141400	Flanking Active TSS	Adipose Nuclei	Adipose
42	chr11:46140400-46141400	Flanking Active TSS	Fetal Thymus	thymus
43	chr11:46140400-46141400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
44	chr11:46140400-46141400	Flanking Active TSS	HUVEC	blood vessel
45	chr11:46140400-46144200	Active TSS	Colonic Mucosa	Colon
46	chr11:46140400-46144400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr11:46140400-46144400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr11:46140400-46144400	Active TSS	Brain Angular Gyrus	brain
49	chr11:46140400-46144400	Active TSS	Fetal Kidney	kidney
50	chr11:46140400-46144400	Active TSS	Psoas Muscle	Psoas

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