Variant report

Variant	rs541581818
Chromosome Location	chr5:118692795-118692796
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:118692399..118693980-chr5:118717576..118719923,2	MCF-7	breast:

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv16366	chr5:118692052-118702846	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118671200-118695400	Weak transcription	A549	lung
2	chr5:118682600-118693600	Weak transcription	Dnd41	blood
3	chr5:118684000-118692800	Weak transcription	K562	blood
4	chr5:118690600-118693200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
5	chr5:118690600-118693400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
6	chr5:118690600-118700400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
7	chr5:118690800-118693800	Active TSS	Rectal Smooth Muscle	rectum
8	chr5:118691000-118693000	Bivalent/Poised TSS	Psoas Muscle	Psoas
9	chr5:118691000-118693000	Active TSS	Right Ventricle	heart
10	chr5:118691000-118693400	Active TSS	HSMMtube	muscle
11	chr5:118691200-118692800	Active TSS	Aorta	Aorta
12	chr5:118691200-118693000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
13	chr5:118691200-118693000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr5:118691200-118693000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr5:118691200-118693000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
16	chr5:118691200-118693000	Active TSS	Fetal Muscle Trunk	muscle
17	chr5:118691200-118693200	Active TSS	Left Ventricle	heart
18	chr5:118691200-118693200	Active TSS	Right Atrium	heart
19	chr5:118691200-118693400	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr5:118691200-118694200	Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr5:118691200-118694200	Active TSS	GM12878-XiMat	blood
22	chr5:118691400-118692800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr5:118691400-118692800	Active TSS	Breast Myoepithelial Primary Cells	Breast
24	chr5:118691400-118692800	Active TSS	Primary monocytes fromperipheralblood	blood
25	chr5:118691400-118692800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr5:118691400-118692800	Active TSS	Lung	lung
27	chr5:118691400-118692800	Active TSS	Rectal Mucosa Donor 31	rectum
28	chr5:118691400-118693000	Active TSS	Colon Smooth Muscle	Colon
29	chr5:118691400-118693000	Active TSS	Sigmoid Colon	Sigmoid Colon
30	chr5:118691400-118693200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr5:118691400-118693200	Active TSS	Primary B cells from peripheral blood	blood
32	chr5:118691400-118693200	Active TSS	Colonic Mucosa	Colon
33	chr5:118691400-118693200	Active TSS	Duodenum Mucosa	Duodenum
34	chr5:118691400-118693400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr5:118691400-118693400	Active TSS	NHDF-Ad	bronchial
36	chr5:118691400-118693400	Active TSS	NHLF	lung
37	chr5:118691400-118693800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr5:118691400-118694400	Active TSS	Rectal Mucosa Donor 29	rectum
39	chr5:118691400-118694400	Active TSS	Stomach Smooth Muscle	stomach
40	chr5:118691600-118692800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
41	chr5:118691600-118692800	Bivalent/Poised TSS	Fetal Intestine Large	intestine
42	chr5:118691800-118693000	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
43	chr5:118691800-118693400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
44	chr5:118691800-118693400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
45	chr5:118691800-118695400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
46	chr5:118691800-118700400	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
47	chr5:118692000-118692800	Enhancers	HepG2	liver
48	chr5:118692000-118693000	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
49	chr5:118692000-118693400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
50	chr5:118692000-118693400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood

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