Variant report

Variant	rs541582099
Chromosome Location	chr16:80603160-80603161
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr16:80603153-80603855	SK-N-SH	brain:	n/a	chr16:80603692-80603700 chr16:80603692-80603699 chr16:80603691-80603700
2	JUN	chr16:80603090-80604311	K562	blood:	n/a	chr16:80603692-80603700 chr16:80603692-80603699 chr16:80603691-80603700

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80595839..80600096-chr16:80600224..80603898,5	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CDYL2-2	chr16:80602713-80603584	ENSG00000250904
2	lnc-CDYL2-2	chr16:80603122-80603581	XLOC_012020
3	lnc-CDYL2-2	chr16:80603122-80603167	ENSG00000260737.1
4	lnc-CDYL2-2	chr16:80603122-80603566	NONHSAT143893
5	lnc-CDYL2-2	chr16:80603122-80603566	NONHSAT143899
6	lnc-CDYL2-2	chr16:80603088-80603495	NONHSAT143901
7	lnc-CDYL2-2	chr16:80603122-80603507	NR_104665

Variant related genes	Relation type
ENSG00000260737	TF binding region
ENSG00000259867	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907001	chr16:80405292-80620611	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	esv3451426	chr16:80601651-80603649	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3373306	chr16:80601951-80603199	Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80599000-80603200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr16:80599000-80603400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr16:80599000-80603400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr16:80599000-80607800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr16:80599200-80603200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr16:80600200-80603400	Weak transcription	Hela-S3	cervix
7	chr16:80602600-80604400	Enhancers	Fetal Intestine Small	intestine
8	chr16:80602800-80603400	Enhancers	Osteobl	bone
9	chr16:80602800-80604200	Enhancers	HUVEC	blood vessel
10	chr16:80602800-80604400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr16:80602800-80604400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr16:80602800-80604400	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr16:80602800-80604400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr16:80602800-80604400	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr16:80602800-80604400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr16:80602800-80604400	Enhancers	Fetal Intestine Large	intestine
17	chr16:80602800-80604400	Enhancers	NH-A	brain
18	chr16:80602800-80604400	Enhancers	NHEK	skin
19	chr16:80603000-80603600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
20	chr16:80603000-80603800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr16:80603000-80604000	Enhancers	HSMM	muscle
22	chr16:80603000-80604200	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr16:80603000-80604200	Enhancers	Duodenum Mucosa	Duodenum
24	chr16:80603000-80604400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr16:80603000-80604400	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr16:80603000-80604400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr16:80603000-80604400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chr16:80603000-80604400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr16:80603000-80604400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr16:80603000-80604400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr16:80603000-80604400	Enhancers	Liver	Liver
32	chr16:80603000-80604400	Enhancers	Small Intestine	intestine
33	chr16:80603000-80604400	Enhancers	NHLF	lung

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