Variant report

Variant	rs541590998
Chromosome Location	chr6:29602773-29602774
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv970100	chr6:29601673-29604881	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29601200-29602800	Flanking Active TSS	Primary B cells from peripheral blood	blood
2	chr6:29601200-29603000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr6:29601800-29603000	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr6:29601800-29608600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr6:29602000-29603000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:29602200-29602800	Enhancers	Primary hematopoietic stem cells	blood
7	chr6:29602400-29602800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:29602400-29603200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr6:29602400-29604000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:29602400-29607200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr6:29602600-29602800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr6:29602600-29603000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr6:29602600-29603000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr6:29602600-29603200	Enhancers	Primary B cells from cord blood	blood
15	chr6:29602600-29607000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:29602600-29607000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr6:29602600-29607000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:29602600-29607000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr6:29602600-29609200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr6:29602600-29609200	Weak transcription	HMEC	breast

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