Variant report

Variant	rs541591920
Chromosome Location	chr12:25360103-25360104
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:25359908..25361525-chr12:25537467..25540336,2	MCF-7	breast:
2	chr12:25359301..25361525-chr12:25535610..25537656,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898922	chr12:25274593-25408047	Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1048631	chr12:25353517-25378661	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv898923	chr12:25357680-25397282	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv898924	chr12:25357680-25398972	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv557798	chr12:25359841-25397282	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25348600-25402200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:25348600-25403200	Weak transcription	Spleen	Spleen
3	chr12:25348800-25360200	Weak transcription	Esophagus	oesophagus
4	chr12:25349000-25360400	Weak transcription	Psoas Muscle	Psoas
5	chr12:25349000-25369200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr12:25349000-25372800	Weak transcription	Aorta	Aorta
7	chr12:25349000-25374200	Weak transcription	Lung	lung
8	chr12:25349000-25386000	Weak transcription	Left Ventricle	heart
9	chr12:25349000-25402400	Weak transcription	Right Ventricle	heart
10	chr12:25349200-25360800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr12:25349200-25362400	Weak transcription	Colonic Mucosa	Colon
12	chr12:25349200-25363200	Weak transcription	Brain Substantia Nigra	brain
13	chr12:25349200-25363400	Weak transcription	Stomach Mucosa	stomach
14	chr12:25349400-25367400	Weak transcription	Fetal Stomach	stomach
15	chr12:25349400-25388200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr12:25349400-25388600	Weak transcription	NHLF	lung
17	chr12:25349400-25393800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr12:25349400-25396000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr12:25349400-25401800	Weak transcription	Fetal Brain Male	brain
20	chr12:25349400-25402600	Weak transcription	Brain Germinal Matrix	brain
21	chr12:25349600-25360800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr12:25349600-25364600	Weak transcription	Colon Smooth Muscle	Colon
23	chr12:25349600-25389000	Weak transcription	Brain Angular Gyrus	brain
24	chr12:25349600-25394600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr12:25349600-25402600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr12:25349600-25402600	Weak transcription	Brain Cingulate Gyrus	brain
27	chr12:25349600-25402600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr12:25349600-25402600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr12:25349800-25360200	Weak transcription	Fetal Muscle Leg	muscle
30	chr12:25349800-25360400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr12:25349800-25360400	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr12:25349800-25379200	Weak transcription	Brain Anterior Caudate	brain
33	chr12:25349800-25386200	Weak transcription	Hela-S3	cervix
34	chr12:25349800-25390200	Weak transcription	K562	blood
35	chr12:25350000-25372600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr12:25350000-25402800	Weak transcription	Ovary	ovary
37	chr12:25353200-25378800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr12:25354000-25402400	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr12:25354400-25368200	Weak transcription	HUVEC	blood vessel
40	chr12:25354400-25369000	Weak transcription	Brain Hippocampus Middle	brain
41	chr12:25354400-25378400	Weak transcription	HMEC	breast
42	chr12:25354400-25402200	Weak transcription	Pancreas	Pancrea
43	chr12:25354600-25389000	Weak transcription	HSMMtube	muscle
44	chr12:25355200-25362600	Strong transcription	Fetal Thymus	thymus
45	chr12:25355400-25366000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr12:25355400-25370600	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr12:25355600-25360600	Weak transcription	Fetal Intestine Large	intestine
48	chr12:25355600-25363400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr12:25355800-25362000	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr12:25355800-25363400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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