Variant report

Variant	rs541609705
Chromosome Location	chr18:43977965-43977966
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:43912407..43914434-chr18:43977281..43979544,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000141622	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3326438	chr18:43974654-43980152	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3405384	chr18:43975654-43980052	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3419380	chr18:43976554-43979652	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv14178	chr18:43977083-43978888	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3317399	chr18:43977290-43979181	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3317400	chr18:43977290-43979181	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43956400-43978400	Weak transcription	Liver	Liver
2	chr18:43964400-43980800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr18:43967800-43981000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr18:43968000-43980000	Weak transcription	Brain Germinal Matrix	brain
5	chr18:43968800-43981400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr18:43969200-43985200	Weak transcription	Right Atrium	heart
7	chr18:43970000-43979200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr18:43972200-43979200	Weak transcription	Fetal Brain Male	brain
9	chr18:43973600-43991400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr18:43974000-43978400	Weak transcription	Fetal Stomach	stomach
11	chr18:43974200-43990400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr18:43974600-43979000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr18:43974600-43980000	Weak transcription	Left Ventricle	heart
14	chr18:43975200-43983400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr18:43975600-43978800	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr18:43975800-43978400	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr18:43976400-43980000	Weak transcription	Fetal Brain Female	brain
18	chr18:43976600-43978000	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr18:43976600-43978600	Enhancers	Esophagus	oesophagus
20	chr18:43976600-43981000	Enhancers	Fetal Muscle Trunk	muscle
21	chr18:43977000-43978000	Weak transcription	Right Ventricle	heart
22	chr18:43977000-43978400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr18:43977000-43979000	Enhancers	Adipose Nuclei	Adipose
24	chr18:43977000-43983200	Enhancers	Fetal Muscle Leg	muscle
25	chr18:43977200-43978200	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr18:43977200-43978400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
27	chr18:43977200-43978400	Enhancers	Primary hematopoietic stem cells	blood
28	chr18:43977200-43978400	Enhancers	K562	blood
29	chr18:43977200-43978800	Enhancers	GM12878-XiMat	blood
30	chr18:43977200-43983000	Weak transcription	Psoas Muscle	Psoas
31	chr18:43977400-43978200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr18:43977600-43978000	Enhancers	Gastric	stomach
33	chr18:43977600-43978400	Genic enhancers	Spleen	Spleen
34	chr18:43977800-43978000	Active TSS	Fetal Lung	lung
35	chr18:43977800-43978400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
36	chr18:43977800-43978400	Enhancers	Pancreas	Pancrea
37	chr18:43977800-43979200	Enhancers	Fetal Heart	heart

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