Variant report

Variant	rs541631271
Chromosome Location	chr19:37761686-37761687
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR3C1	chr19:37761496-37762588	A549	lung:	n/a	n/a
2	TCF3	chr19:37761530-37761875	GM12878	blood:	n/a	n/a
3	REST	chr19:37761550-37762079	PANC-1	pancreas:	n/a	n/a
4	FOXA2	chr19:37759445-37794668	A549	lung:	n/a	n/a
5	JUND	chr19:37760625-37762820	A549	lung:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:37761650-37761700	HEEpiC	esophagus:	n/a
2	chr19:37761650-37761700	CMK	blood:	n/a
3	chr19:37761650-37761700	MCF10A-Er-Src	breast:	n/a
4	chr19:37761650-37761700	A549	lung:	n/a
5	chr19:37761650-37761700	AG04449	skin:	fetal
6	chr19:37761650-37761700	HUVEC	blood vessel:	n/a
7	chr19:37761650-37761700	GM12892	blood:	n/a
8	chr19:37761650-37761700	AG09319	gingival:	n/a
9	chr19:37761650-37761700	NHBE	bronchial:	n/a
10	chr19:37761650-37761700	SKMC	muscle:	n/a
11	chr19:37761650-37761700	U87	brain:	n/a
12	chr19:37761650-37761700	NH-A	brain:	n/a
13	chr19:37761650-37761700	AG09309	skin:	n/a
14	chr19:37761650-37761700	Hela-S3	cervix:	n/a
15	chr19:37761650-37761700	SK-N-SH_RA	brain:	n/a
16	chr19:37761650-37761700	SAEC	small airway:	n/a
17	chr19:37761650-37761700	HEK293	kidney:	embryo
18	chr19:37761650-37761700	Hepatocyte	liver:	n/a
19	chr19:37761650-37761700	K562	blood:	n/a
20	chr19:37761650-37761700	NHDF-neo	bronchial:	n/a
21	chr19:37761650-37761700	HCT-116	colon:	n/a
22	chr19:37761650-37761700	HCM	heart:	n/a
23	chr19:37761650-37761700	HRCEpiC	kidney:	n/a
24	chr19:37761650-37761700	GM06990	blood:	n/a
25	chr19:37761650-37761700	H1-hESC	embryonic stem cell:	embryo
26	chr19:37761650-37761700	NT2-D1	testis:	n/a
27	chr19:37761650-37761700	HCPEpiC	choroid plexus:	n/a
28	chr19:37761650-37761700	HL-60	blood:	n/a
29	chr19:37761650-37761700	RPTEC	kidney:	n/a
30	chr19:37761650-37761700	HNPCEpiC	eye:	n/a
31	chr19:37761650-37761700	MCF-7	breast:	n/a
32	chr19:37761650-37761700	SK-N-SH	brain:	n/a
33	chr19:37761650-37761700	SK-N-MC	brain:	n/a
34	chr19:37761650-37761700	PANC-1	pancreas:	n/a
35	chr19:37761650-37761700	HRE	kidney:	n/a
36	chr19:37761650-37761700	HMEC	breast:	n/a
37	chr19:37761650-37761700	NB4	blood:	n/a
38	chr19:37761650-37761700	HAEpiC	amniotic membrane:	n/a
39	chr19:37761650-37761700	Jurkat	blood:	n/a
40	chr19:37761650-37761700	AoSMC	blood vessel:	n/a
41	chr19:37761650-37761700	PFSK-1	brain:	n/a
42	chr19:37761650-37761700	T-47D	breast:	n/a
43	chr19:37761650-37761700	BE2_C	brain:	n/a
44	chr19:37761650-37761700	HCF	heart:	n/a
45	chr19:37761650-37761700	HRPEpiC	eye:	n/a
46	chr19:37761650-37761700	LNCaP	prostate:	n/a
47	chr19:37761650-37761700	PrEC	prostate:	n/a
48	chr19:37761650-37761700	GM19239	blood:	n/a
49	chr19:37761650-37761700	ECC-1	luminal epithelium:	n/a
50	chr19:37761650-37761700	AG10803	skin:	n/a

No data

Variant related genes	Relation type
ENSG00000267605	TF binding region
ENSG00000267605	CpG island

Extended variants
information (count: 24 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv911652	chr19:37437106-37774299	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv9717	chr19:37721760-37796698	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3520361	chr19:37745067-37811325	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv3520362	chr19:37745067-37811325	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv1832219	chr19:37747108-37793960	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv978811	chr19:37749967-37820517	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv821351	chr19:37756399-37796493	Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv12700	chr19:37756909-37794853	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv3337270	chr19:37758512-37795610	ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv3369946	chr19:37758512-37795610	ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv3377915	chr19:37758512-37795610	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
15	esv3416120	chr19:37758512-37795610	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
16	esv3430128	chr19:37758512-37795610	Weak transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv3390818	chr19:37758512-37795710	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv1791810	chr19:37760982-37794308	Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
19	esv1843809	chr19:37760982-37794308	ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
20	esv1808040	chr19:37760982-37794824	Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
21	esv1811915	chr19:37760982-37794824	ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
22	esv1822559	chr19:37760982-37794824	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
23	esv1830290	chr19:37760982-37794824	Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
24	esv1832481	chr19:37760982-37794824	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37759400-37762400	Weak transcription	Ovary	ovary
2	chr19:37761600-37762200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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