Variant report

Variant	rs541636609
Chromosome Location	chr6:86446689-86446690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:86446688-86446738	SKMC	muscle:	n/a
2	chr6:86446688-86446738	HCM	heart:	n/a
3	chr6:86446688-86446738	NT2-D1	testis:	n/a
4	chr6:86446688-86446738	HUVEC	blood vessel:	n/a
5	chr6:86446688-86446738	HCPEpiC	choroid plexus:	n/a
6	chr6:86446688-86446738	PrEC	prostate:	n/a
7	chr6:86446688-86446738	Hela-S3	cervix:	n/a
8	chr6:86446688-86446738	HIPEpiC	eye:	n/a
9	chr6:86446688-86446738	GM12892	blood:	n/a
10	chr6:86446688-86446738	BE2_C	brain:	n/a
11	chr6:86446688-86446738	NHBE	bronchial:	n/a
12	chr6:86446688-86446738	Jurkat	blood:	n/a
13	chr6:86446688-86446738	AG09319	gingival:	n/a
14	chr6:86446688-86446738	A549	lung:	n/a
15	chr6:86446688-86446738	AG04449	skin:	fetal
16	chr6:86446688-86446738	Hepatocyte	liver:	n/a
17	chr6:86446688-86446738	HAEpiC	amniotic membrane:	n/a
18	chr6:86446688-86446738	T-47D	breast:	n/a
19	chr6:86446688-86446738	PFSK-1	brain:	n/a
20	chr6:86446688-86446738	ECC-1	luminal epithelium:	n/a
21	chr6:86446688-86446738	SK-N-SH	brain:	n/a
22	chr6:86446688-86446738	IMR90	lung:	fetal
23	chr6:86446688-86446738	AG10803	skin:	n/a
24	chr6:86446688-86446738	HL-60	blood:	n/a
25	chr6:86446688-86446738	HCT-116	colon:	n/a
26	chr6:86446688-86446738	HEK293	kidney:	embryo
27	chr6:86446688-86446738	HRPEpiC	eye:	n/a
28	chr6:86446688-86446738	SK-N-SH_RA	brain:	n/a
29	chr6:86446688-86446738	ovcar-3	ovarian:	n/a
30	chr6:86446688-86446738	SK-N-MC	brain:	n/a
31	chr6:86446688-86446738	MCF-7	breast:	n/a
32	chr6:86446688-86446738	LNCaP	prostate:	n/a
33	chr6:86446688-86446738	H1-hESC	embryonic stem cell:	embryo
34	chr6:86446688-86446738	CMK	blood:	n/a
35	chr6:86446688-86446738	U87	brain:	n/a
36	chr6:86446688-86446738	GM06990	blood:	n/a
37	chr6:86446688-86446738	AG09309	skin:	n/a
38	chr6:86446688-86446738	NB4	blood:	n/a
39	chr6:86446688-86446738	HMEC	breast:	n/a
40	chr6:86446688-86446738	AG04450	lung:	fetal
41	chr6:86446688-86446738	HCF	heart:	n/a
42	chr6:86446688-86446738	Caco-2	colon:	n/a
43	chr6:86446688-86446738	HNPCEpiC	eye:	n/a
44	chr6:86446688-86446738	ProgFib	skin:	n/a
45	chr6:86446688-86446738	GM12891	blood:	n/a
46	chr6:86446688-86446738	HepG2	liver:	n/a
47	chr6:86446688-86446738	PANC-1	pancreas:	n/a
48	chr6:86446688-86446738	GM19239	blood:	n/a
49	chr6:86446688-86446738	NH-A	brain:	n/a
50	chr6:86446688-86446738	AoSMC	blood vessel:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:86386878..86389803-chr6:86445514..86448985,3	K562	blood:
2	chr6:86387077..86390204-chr6:86446127..86450544,5	K562	blood:

No data

Variant related genes	Relation type
SMIM11P1	CpG island
ENSG00000203875	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028293	chr6:86353958-86778912	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	100 gene(s)	inside rSNPs	diseases
2	nsv538350	chr6:86353958-86778912	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	100 gene(s)	inside rSNPs	diseases
3	nsv886335	chr6:86445651-86669361	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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