Variant report

Variant	rs541645552
Chromosome Location	chr4:15459681-15459682
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15233081..15233861-chr4:15459159..15460153,3	MCF-7	breast:
2	chr4:15240046..15241001-chr4:15458873..15460011,5	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	esv2760903	chr4:15458598-15464619	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15438800-15471200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:15456200-15459800	Enhancers	NHLF	lung
3	chr4:15456400-15459800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr4:15458200-15459800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:15458200-15459800	Enhancers	Ovary	ovary
6	chr4:15458400-15459800	Enhancers	Primary B cells from peripheral blood	blood
7	chr4:15458400-15460000	Enhancers	Fetal Kidney	kidney
8	chr4:15458600-15461200	Enhancers	Fetal Brain Male	brain
9	chr4:15459000-15459800	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr4:15459200-15460600	Weak transcription	NHDF-Ad	bronchial
11	chr4:15459200-15461200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:15459400-15459800	Enhancers	Primary B cells from cord blood	blood
13	chr4:15459400-15459800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:15459400-15460400	Weak transcription	Fetal Brain Female	brain
15	chr4:15459400-15462000	Enhancers	Stomach Smooth Muscle	stomach
16	chr4:15459600-15460600	Weak transcription	Aorta	Aorta
17	chr4:15459600-15461200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr4:15459600-15461200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:15459600-15461200	Weak transcription	Fetal Stomach	stomach
20	chr4:15459600-15461200	Weak transcription	HSMM	muscle
21	chr4:15459600-15461200	Weak transcription	Osteobl	bone
22	chr4:15459600-15470600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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