Variant report

Variant	rs541659153
Chromosome Location	chr12:60523552-60523553
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 162 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:162 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428591	chr12:60446360-60631044	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv427913	chr12:60462443-60569344	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2760273	chr12:60489188-60561925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1812349	chr12:60516593-60524969	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	esv1825056	chr12:60518417-60524969	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
6	esv1839637	chr12:60518599-60524927	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
7	esv1839958	chr12:60518599-60524927	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	esv1847663	chr12:60518599-60524927	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
9	nsv511495	chr12:60518599-60541932	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv559105	chr12:60518842-60523699	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
11	nsv559106	chr12:60518842-60524514	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
12	nsv559107	chr12:60518842-60540108	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv559108	chr12:60518842-60548334	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv3480964	chr12:60519885-60526983	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
15	nsv435632	chr12:60520435-60525141	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
16	esv996790	chr12:60520670-60525398	Weak transcription	n/a	n/a	inside rSNPs	diseases
17	esv3480986	chr12:60520710-60526058	Weak transcription	n/a	n/a	inside rSNPs	diseases
18	esv3523382	chr12:60521135-60526033	Weak transcription	n/a	n/a	inside rSNPs	diseases
19	esv1828846	chr12:60521146-60524969	Weak transcription	n/a	n/a	inside rSNPs	diseases
20	esv3480953	chr12:60521425-60525321	Weak transcription	n/a	n/a	inside rSNPs	diseases
21	esv2454662	chr12:60521529-60525966	Weak transcription	n/a	n/a	inside rSNPs	diseases
22	esv3481008	chr12:60521635-60525533	Weak transcription	n/a	n/a	inside rSNPs	diseases
23	esv1804637	chr12:60521638-60525106	Weak transcription	n/a	n/a	inside rSNPs	diseases
24	esv1805350	chr12:60521638-60525106	Weak transcription	n/a	n/a	inside rSNPs	diseases
25	esv1830195	chr12:60521638-60525106	Weak transcription	n/a	n/a	inside rSNPs	diseases
26	esv1831621	chr12:60521638-60525106	Weak transcription	n/a	n/a	inside rSNPs	diseases
27	esv1925610	chr12:60521663-60525229	Weak transcription	n/a	n/a	inside rSNPs	diseases
28	nsv819163	chr12:60521700-60525177	Weak transcription	n/a	n/a	inside rSNPs	diseases
29	esv3481019	chr12:60521714-60525137	Weak transcription	n/a	n/a	inside rSNPs	diseases
30	esv3480940	chr12:60521727-60525106	Weak transcription	n/a	n/a	inside rSNPs	diseases
31	esv3523379	chr12:60521751-60525122	Weak transcription	n/a	n/a	inside rSNPs	diseases
32	nsv826395	chr12:60521755-60525027	Weak transcription	n/a	n/a	inside rSNPs	diseases
33	nsv821477	chr12:60521755-60525048	Weak transcription	n/a	n/a	inside rSNPs	diseases
34	nsv826396	chr12:60521755-60525048	Weak transcription	n/a	n/a	inside rSNPs	diseases
35	esv3523383	chr12:60521755-60525081	Weak transcription	n/a	n/a	inside rSNPs	diseases
36	esv3481030	chr12:60521765-60525107	Weak transcription	n/a	n/a	inside rSNPs	diseases
37	nsv512279	chr12:60521770-60525043	Weak transcription	n/a	n/a	inside rSNPs	diseases
38	esv6654	chr12:60521772-60525236	Weak transcription	n/a	n/a	inside rSNPs	diseases
39	esv3480975	chr12:60521779-60525061	Weak transcription	n/a	n/a	inside rSNPs	diseases
40	esv3523384	chr12:60521783-60525152	Weak transcription	n/a	n/a	inside rSNPs	diseases
41	esv3523380	chr12:60521794-60525091	Weak transcription	n/a	n/a	inside rSNPs	diseases
42	nsv826397	chr12:60521824-60525027	Weak transcription	n/a	n/a	inside rSNPs	diseases
43	esv3480997	chr12:60521826-60525040	Weak transcription	n/a	n/a	inside rSNPs	diseases
44	esv3523381	chr12:60521836-60525044	Weak transcription	n/a	n/a	inside rSNPs	diseases
45	esv3481041	chr12:60521840-60525042	Weak transcription	n/a	n/a	inside rSNPs	diseases
46	esv3523386	chr12:60521840-60525042	Weak transcription	n/a	n/a	inside rSNPs	diseases
47	esv1364456	chr12:60521845-60525041	Weak transcription	n/a	n/a	inside rSNPs	diseases
48	esv15422	chr12:60521846-60525048	Weak transcription	n/a	n/a	inside rSNPs	diseases
49	nsv975651	chr12:60522047-60526142	Weak transcription	n/a	n/a	inside rSNPs	diseases
50	esv1793406	chr12:60522630-60523699	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60517800-60523600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links