Variant report

Variant	rs541659380
Chromosome Location	chr6:88320652-88320653
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:88319727..88322200-chr6:88410593..88412100,2	K562	blood:
2	chr6:88303345..88305306-chr6:88319508..88322473,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135334	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031961	chr6:88110401-88367006	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv1031460	chr6:88153079-88410050	Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv1026482	chr6:88164934-88409728	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1027706	chr6:88168987-88409728	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	esv3475145	chr6:88320117-88320679	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88300400-88320800	Weak transcription	Spleen	Spleen
2	chr6:88300400-88323400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:88300600-88321800	Weak transcription	Lung	lung
4	chr6:88300600-88323400	Weak transcription	Gastric	stomach
5	chr6:88300600-88391200	Weak transcription	Colonic Mucosa	Colon
6	chr6:88300800-88323600	Weak transcription	Aorta	Aorta
7	chr6:88301000-88321000	Weak transcription	Brain Angular Gyrus	brain
8	chr6:88301000-88321000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:88301000-88323600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:88301000-88330200	Weak transcription	Right Ventricle	heart
11	chr6:88301000-88347200	Weak transcription	Small Intestine	intestine
12	chr6:88301200-88320800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:88301200-88320800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr6:88301200-88323400	Weak transcription	Thymus	Thymus
15	chr6:88301200-88385000	Weak transcription	Colon Smooth Muscle	Colon
16	chr6:88301400-88320800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr6:88301400-88321000	Weak transcription	Brain Hippocampus Middle	brain
18	chr6:88301400-88322400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr6:88301400-88338400	Weak transcription	NHLF	lung
20	chr6:88301400-88354400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr6:88301400-88354600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr6:88301600-88320800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:88302000-88347400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr6:88302000-88354400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr6:88302000-88354600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr6:88305000-88398800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr6:88305200-88329000	Weak transcription	HSMMtube	muscle
28	chr6:88305400-88320800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr6:88305400-88320800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr6:88305600-88320800	Weak transcription	Fetal Kidney	kidney
31	chr6:88305600-88320800	Weak transcription	Fetal Lung	lung
32	chr6:88305600-88322400	Weak transcription	Brain Anterior Caudate	brain
33	chr6:88305600-88322400	Weak transcription	Psoas Muscle	Psoas
34	chr6:88305800-88320800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr6:88305800-88320800	Weak transcription	Duodenum Mucosa	Duodenum
36	chr6:88305800-88325200	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr6:88306000-88320800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr6:88306000-88321600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr6:88306000-88322400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr6:88307200-88321000	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr6:88307400-88322400	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr6:88308600-88321800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr6:88308800-88369800	Weak transcription	Fetal Brain Male	brain
44	chr6:88311400-88334600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:88311600-88320800	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr6:88312200-88371200	Weak transcription	NHEK	skin
47	chr6:88312400-88380600	Weak transcription	Brain Substantia Nigra	brain
48	chr6:88313800-88338200	Weak transcription	NHDF-Ad	bronchial
49	chr6:88314000-88384800	Weak transcription	Hela-S3	cervix
50	chr6:88314200-88399200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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