Variant report

Variant	rs541717532
Chromosome Location	chr2:32334908-32334909
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949102	chr2:32030307-33011548	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv833670	chr2:32295778-32481857	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv873778	chr2:32297984-32409007	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv873779	chr2:32330885-32372245	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv817386	chr2:32332893-32724794	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
6	nsv1001038	chr2:32333378-32657112	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	nsv1009359	chr2:32333378-32725117	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	nsv535613	chr2:32333378-32725117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
9	esv3358495	chr2:32333998-32337596	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
10	esv3402716	chr2:32334473-32337321	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:32290400-32353400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr2:32292000-32343200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:32292600-32353800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr2:32295800-32353800	Weak transcription	Fetal Brain Male	brain
5	chr2:32296400-32362600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr2:32297600-32360600	Weak transcription	Osteobl	bone
7	chr2:32298800-32341400	Weak transcription	Small Intestine	intestine
8	chr2:32300000-32339600	Weak transcription	HepG2	liver
9	chr2:32309800-32381200	Weak transcription	NHDF-Ad	bronchial
10	chr2:32313200-32360600	Weak transcription	NH-A	brain
11	chr2:32316000-32353600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr2:32316200-32343200	Weak transcription	HSMM	muscle
13	chr2:32322200-32353400	Weak transcription	K562	blood
14	chr2:32325400-32353800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr2:32326000-32352200	Weak transcription	HSMMtube	muscle
16	chr2:32331200-32341000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr2:32331200-32370000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr2:32331400-32341200	Weak transcription	Stomach Mucosa	stomach
19	chr2:32331400-32368600	Weak transcription	Psoas Muscle	Psoas
20	chr2:32331400-32370000	Weak transcription	Right Ventricle	heart
21	chr2:32331600-32338800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr2:32331600-32341000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr2:32331600-32341600	Weak transcription	Aorta	Aorta
24	chr2:32331600-32341600	Weak transcription	Esophagus	oesophagus
25	chr2:32331600-32343600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr2:32331600-32343600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr2:32331600-32344000	Weak transcription	Brain Angular Gyrus	brain
28	chr2:32331600-32353600	Weak transcription	Brain Substantia Nigra	brain
29	chr2:32331600-32353600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr2:32331600-32353800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr2:32331600-32353800	Weak transcription	Brain Anterior Caudate	brain
32	chr2:32331600-32354400	Weak transcription	Colonic Mucosa	Colon
33	chr2:32331600-32354600	Weak transcription	Spleen	Spleen
34	chr2:32331600-32377400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr2:32331600-32390200	Weak transcription	Gastric	stomach
36	chr2:32331600-32390200	Weak transcription	Pancreas	Pancrea
37	chr2:32331800-32336000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr2:32331800-32337200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr2:32331800-32338800	Weak transcription	Thymus	Thymus
40	chr2:32331800-32340800	Weak transcription	Placenta	Placenta
41	chr2:32331800-32341600	Weak transcription	Fetal Muscle Trunk	muscle
42	chr2:32331800-32343800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr2:32331800-32344000	Weak transcription	Colon Smooth Muscle	Colon
44	chr2:32331800-32350400	Weak transcription	Lung	lung
45	chr2:32331800-32351000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr2:32331800-32353400	Weak transcription	Fetal Kidney	kidney
47	chr2:32331800-32353600	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr2:32331800-32360600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr2:32331800-32376400	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr2:32332000-32338600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links