Variant report

Variant	rs541720923
Chromosome Location	chr11:57972663-57972664
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:57972613-57972663	NHDF-neo	bronchial:	n/a
2	chr11:57972613-57972663	HIPEpiC	eye:	n/a
3	chr11:57972613-57972663	SK-N-SH	brain:	n/a
4	chr11:57972613-57972663	HUVEC	blood vessel:	n/a
5	chr11:57972613-57972663	HCF	heart:	n/a
6	chr11:57972613-57972663	HCM	heart:	n/a
7	chr11:57972613-57972663	NH-A	brain:	n/a
8	chr11:57972613-57972663	RPTEC	kidney:	n/a
9	chr11:57972613-57972663	GM12891	blood:	n/a
10	chr11:57972613-57972663	NHBE	bronchial:	n/a
11	chr11:57972613-57972663	GM12892	blood:	n/a
12	chr11:57972613-57972663	Jurkat	blood:	n/a
13	chr11:57972613-57972663	NB4	blood:	n/a
14	chr11:57972613-57972663	Hela-S3	cervix:	n/a
15	chr11:57972613-57972663	AG09309	skin:	n/a
16	chr11:57972613-57972663	LNCaP	prostate:	n/a
17	chr11:57972613-57972663	PANC-1	pancreas:	n/a
18	chr11:57972613-57972663	SAEC	small airway:	n/a
19	chr11:57972613-57972663	HEK293	kidney:	embryo
20	chr11:57972613-57972663	AG10803	skin:	n/a
21	chr11:57972613-57972663	BJ	skin:	n/a
22	chr11:57972613-57972663	ProgFib	skin:	n/a
23	chr11:57972613-57972663	SK-N-MC	brain:	n/a
24	chr11:57972613-57972663	HEEpiC	esophagus:	n/a
25	chr11:57972613-57972663	AoSMC	blood vessel:	n/a
26	chr11:57972613-57972663	CMK	blood:	n/a
27	chr11:57972613-57972663	BE2_C	brain:	n/a
28	chr11:57972613-57972663	HRE	kidney:	n/a
29	chr11:57972613-57972663	PrEC	prostate:	n/a
30	chr11:57972613-57972663	SKMC	muscle:	n/a
31	chr11:57972613-57972663	HRPEpiC	eye:	n/a
32	chr11:57972613-57972663	AG04450	lung:	fetal
33	chr11:57972613-57972663	MCF10A-Er-Src	breast:	n/a
34	chr11:57972613-57972663	MCF-7	breast:	n/a
35	chr11:57972613-57972663	ovcar-3	ovarian:	n/a
36	chr11:57972613-57972663	HMEC	breast:	n/a
37	chr11:57972613-57972663	K562	blood:	n/a
38	chr11:57972613-57972663	HNPCEpiC	eye:	n/a
39	chr11:57972613-57972663	T-47D	breast:	n/a
40	chr11:57972613-57972663	GM19239	blood:	n/a
41	chr11:57972613-57972663	Caco-2	colon:	n/a
42	chr11:57972613-57972663	HL-60	blood:	n/a
43	chr11:57972613-57972663	HCT-116	colon:	n/a
44	chr11:57972613-57972663	IMR90	lung:	fetal
45	chr11:57972613-57972663	SK-N-SH_RA	brain:	n/a
46	chr11:57972613-57972663	HPAEpiC	pulmonary alveolar:	n/a
47	chr11:57972613-57972663	GM06990	blood:	n/a
48	chr11:57972613-57972663	Hepatocyte	liver:	n/a
49	chr11:57972613-57972663	U87	brain:	n/a
50	chr11:57972613-57972663	ECC-1	luminal epithelium:	n/a

No data

Variant related genes	Relation type
OR1S2	CpG island

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv832165	chr11:57806024-58009076	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv832166	chr11:57852031-58006189	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1039453	chr11:57924680-58119650	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv541051	chr11:57924680-58119650	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv825916	chr11:57967767-57982841	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
10	nsv825917	chr11:57969751-57983804	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
11	nsv825918	chr11:57969751-57983974	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
12	nsv972033	chr11:57970600-57983112	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
13	nsv825921	chr11:57971052-57982841	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
14	nsv825922	chr11:57971052-57983974	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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