Variant report

Variant	rs541733005
Chromosome Location	chr3:47705142-47705143
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003072	chr3:47673628-47869154	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv590232	chr3:47681881-47765547	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv876758	chr3:47681881-47842234	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	25 gene(s)	inside rSNPs	diseases
4	nsv967013	chr3:47704199-47705557	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47654400-47707600	Weak transcription	Stomach Mucosa	stomach
2	chr3:47655800-47765600	Strong transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:47656600-47790800	Strong transcription	Fetal Thymus	thymus
4	chr3:47661400-47711400	Weak transcription	Colonic Mucosa	Colon
5	chr3:47672000-47718600	Weak transcription	Right Ventricle	heart
6	chr3:47673600-47719200	Weak transcription	Small Intestine	intestine
7	chr3:47677200-47707400	Weak transcription	HMEC	breast
8	chr3:47677200-47715400	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:47677200-47720000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:47677400-47711600	Weak transcription	Brain Substantia Nigra	brain
11	chr3:47677800-47712000	Weak transcription	Brain Angular Gyrus	brain
12	chr3:47678000-47717800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr3:47684200-47711800	Weak transcription	Ovary	ovary
14	chr3:47684600-47705200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr3:47684800-47705200	Weak transcription	Aorta	Aorta
16	chr3:47684800-47718400	Weak transcription	Spleen	Spleen
17	chr3:47688200-47705200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:47688200-47763400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr3:47688600-47710600	Weak transcription	Adipose Nuclei	Adipose
20	chr3:47688600-47718000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr3:47689800-47711800	Weak transcription	Left Ventricle	heart
22	chr3:47689800-47714200	Weak transcription	Psoas Muscle	Psoas
23	chr3:47692800-47719200	Weak transcription	Gastric	stomach
24	chr3:47694400-47745800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr3:47695000-47705600	Strong transcription	Liver	Liver
26	chr3:47695000-47713800	Strong transcription	Primary B cells from peripheral blood	blood
27	chr3:47695200-47737200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr3:47697000-47709200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr3:47697800-47706400	Strong transcription	Duodenum Mucosa	Duodenum
30	chr3:47698200-47709200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr3:47698400-47731400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr3:47698600-47705600	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr3:47699000-47705400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr3:47699000-47712600	Strong transcription	Fetal Muscle Trunk	muscle
35	chr3:47699800-47705400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr3:47700200-47705200	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr3:47700200-47715200	Weak transcription	Fetal Brain Male	brain
38	chr3:47700200-47757000	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr3:47700400-47707600	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr3:47700400-47710600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr3:47700400-47710600	Weak transcription	Stomach Smooth Muscle	stomach
42	chr3:47700400-47715400	Weak transcription	Fetal Heart	heart
43	chr3:47700600-47705400	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr3:47700600-47710200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr3:47700600-47711200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr3:47700600-47718400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr3:47700800-47710200	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr3:47701200-47765000	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr3:47701200-47765600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr3:47701400-47739800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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