Variant report

Variant	rs541765777
Chromosome Location	chr1:159918602-159918603
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872489	chr1:159844819-159940000	Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv524006	chr1:159886422-159923111	Flanking Active TSS Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv548055	chr1:159918418-159940000	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159915800-159919600	Weak transcription	Lung	lung
2	chr1:159916000-159918800	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:159916200-159918800	Weak transcription	K562	blood
4	chr1:159916200-159919000	Weak transcription	A549	lung
5	chr1:159916200-159919800	Enhancers	Fetal Intestine Small	intestine
6	chr1:159916200-159920000	Enhancers	Stomach Mucosa	stomach
7	chr1:159916200-159930600	Weak transcription	Right Atrium	heart
8	chr1:159916600-159918800	Weak transcription	Placenta	Placenta
9	chr1:159916600-159919600	Weak transcription	Colonic Mucosa	Colon
10	chr1:159916600-159920800	Weak transcription	Fetal Lung	lung
11	chr1:159916800-159918800	Weak transcription	Esophagus	oesophagus
12	chr1:159916800-159918800	Weak transcription	Fetal Kidney	kidney
13	chr1:159916800-159918800	Weak transcription	Pancreas	Pancrea
14	chr1:159916800-159919000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:159916800-159919000	Weak transcription	Gastric	stomach
16	chr1:159916800-159919200	Weak transcription	HMEC	breast
17	chr1:159916800-159923600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:159917000-159918800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:159917000-159919800	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr1:159917000-159923400	Weak transcription	NHEK	skin
21	chr1:159917600-159919800	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr1:159918000-159919800	Enhancers	Duodenum Mucosa	Duodenum
23	chr1:159918200-159919800	Enhancers	Fetal Intestine Large	intestine
24	chr1:159918600-159920000	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr1:159918600-159920000	Enhancers	Rectal Mucosa Donor 29	rectum
26	chr1:159918600-159920400	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr1:159918600-159921400	Enhancers	Placenta Amnion	Placenta Amnion

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