Variant report

Variant	rs541767975
Chromosome Location	chr11:75380032-75380033
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:75380000-75380150	NHDF-neo	bronchial:	n/a	n/a
2	RAD21	chr11:75379576-75380201	SK-N-SH_RA	brain:	n/a	n/a
3	RAD21	chr11:75379950-75380157	IMR90	lung:	n/a	n/a
4	POLR2A	chr11:75378784-75380454	H1-neurons	neurons:	n/a	n/a
5	RAD21	chr11:75379779-75380234	H1-hESC	embryonic stem cell:	n/a	n/a
6	REST	chr11:75379157-75380322	H1-neurons	neurons:	n/a	chr11:75379581-75379590 chr11:75380239-75380252 chr11:75379555-75379568
7	CTCF	chr11:75379940-75380090	NHEK	skin:	n/a	n/a
8	SUZ12	chr11:75378325-75380694	NT2-D1	testis:	n/a	n/a
9	TAF1	chr11:75379381-75380361	H1-neurons	neurons:	n/a	n/a
10	ZNF263	chr11:75379225-75380465	HEK293-T-REx	kidney:	n/a	chr11:75379555-75379564 chr11:75380260-75380269
11	CCNT2	chr11:75379974-75380101	K562	blood:	n/a	n/a
12	ZNF143	chr11:75380030-75380183	H1-hESC	embryonic stem cell:	n/a	n/a
13	MXI1	chr11:75377552-75380555	SK-N-SH	brain:	n/a	n/a
14	CTCF	chr11:75380020-75380170	SK-N-SH_RA	brain:	n/a	n/a
15	MAZ	chr11:75380018-75380161	K562	blood:	n/a	n/a
16	CTCF	chr11:75379900-75380050	BJ	skin:	n/a	n/a
17	CTCF	chr11:75379920-75380070	Caco-2	colon:	n/a	n/a
18	MAX	chr11:75378087-75380069	A549	lung:	n/a	n/a
19	UBTF	chr11:75380004-75380042	K562	blood:	n/a	n/a
20	CTCF	chr11:75380020-75380170	AoAF	blood vessel:	n/a	n/a
21	RAD21	chr11:75379719-75380162	H1-hESC	embryonic stem cell:	n/a	n/a
22	CTCF	chr11:75379960-75380110	AoAF	blood vessel:	n/a	n/a
23	POLR2A	chr11:75378784-75380413	H1-neurons	neurons:	n/a	n/a
24	CTCF	chr11:75379960-75380110	HMEC	breast:	n/a	n/a
25	CTCF	chr11:75379940-75380090	AG09319	gingival:	n/a	n/a
26	E2F6	chr11:75379237-75380053	H1-hESC	embryonic stem cell:	n/a	n/a
27	CTCF	chr11:75379920-75380070	GM12874	blood:	n/a	n/a
28	CTCF	chr11:75379900-75380050	WERI-Rb-1	eye:	n/a	n/a
29	CTCF	chr11:75379963-75380066	H1-hESC	embryonic stem cell:	n/a	n/a
30	CTCF	chr11:75379940-75380090	WERI-Rb-1	eye:	n/a	n/a
31	CTCF	chr11:75380004-75380091	Medullo	brain:	n/a	n/a
32	TAF1	chr11:75378940-75380300	H1-neurons	neurons:	n/a	n/a
33	RAD21	chr11:75379481-75380237	SK-N-SH_RA	brain:	n/a	n/a
34	CTBP2	chr11:75378089-75380205	H1-hESC	embryonic stem cell:	n/a	n/a
35	REST	chr11:75375965-75380745	H1-neurons	neurons:	n/a	chr11:75379581-75379590 chr11:75378441-75378454 chr11:75380239-75380252 chr11:75379555-75379568
36	CTCF	chr11:75379900-75380050	AG04449	skin:	n/a	n/a
37	RCOR1	chr11:75379966-75380167	K562	blood:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MOGAT2-4	chr11:75379481-75382008	NONHSAT023118

Variant related genes	Relation type
MAP6	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	esv3428029	chr11:75377804-75381602	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75376600-75380200	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr11:75376600-75380600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:75377800-75380400	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr11:75378000-75380200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
5	chr11:75378000-75380200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:75378000-75380400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
7	chr11:75378000-75380400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
8	chr11:75378000-75380400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:75378000-75380400	Flanking Active TSS	Stomach Smooth Muscle	stomach
10	chr11:75378200-75380200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
11	chr11:75378200-75380200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
12	chr11:75378200-75380200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:75378200-75380200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:75378200-75380200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr11:75378200-75380200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:75378200-75380400	Active TSS	Colon Smooth Muscle	Colon
17	chr11:75378200-75380800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
18	chr11:75378400-75380200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:75378400-75380200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
20	chr11:75378400-75380200	Bivalent/Poised TSS	Primary T helper naive cells fromperipheralblood	blood
21	chr11:75378400-75380200	Active TSS	Aorta	Aorta
22	chr11:75378400-75380200	Active TSS	Brain Anterior Caudate	brain
23	chr11:75378400-75380200	Active TSS	Brain Cingulate Gyrus	brain
24	chr11:75378400-75380200	Flanking Bivalent TSS/Enh	HMEC	breast
25	chr11:75378400-75380400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:75378400-75380400	Active TSS	Brain Substantia Nigra	brain
27	chr11:75378400-75380600	Active TSS	Fetal Brain Female	brain
28	chr11:75378600-75380200	Active TSS	Breast Myoepithelial Primary Cells	Breast
29	chr11:75378600-75380200	Active TSS	Brain Angular Gyrus	brain
30	chr11:75378600-75380200	Active TSS	HSMM	muscle
31	chr11:75378800-75380200	Bivalent/Poised TSS	Psoas Muscle	Psoas
32	chr11:75379200-75380200	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr11:75379200-75380200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:75379200-75380200	Active TSS	Fetal Brain Male	brain
35	chr11:75379200-75380200	Enhancers	Gastric	stomach
36	chr11:75379200-75380200	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
37	chr11:75379200-75380400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
38	chr11:75379400-75380200	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
39	chr11:75379400-75380200	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr11:75379400-75380200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr11:75379400-75380200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr11:75379400-75380200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
43	chr11:75379400-75380200	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
44	chr11:75379400-75380200	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
45	chr11:75379400-75380200	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
46	chr11:75379400-75380200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
47	chr11:75379400-75380200	Flanking Active TSS	Ovary	ovary
48	chr11:75379400-75380200	Enhancers	Pancreas	Pancrea
49	chr11:75379400-75380200	Flanking Active TSS	Right Ventricle	heart
50	chr11:75379400-75380200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle

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