Variant report

Variant	rs541767989
Chromosome Location	chr5:43034713-43034714
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:43034026..43036831-chr5:43037498..43040104,5	MCF-7	breast:
2	chr5:43015314..43020034-chr5:43032196..43035172,5	MCF-7	breast:
3	chr5:43024225..43027639-chr5:43033975..43036127,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF131-7	chr5:43033818-43034737	ENSG00000272382.1

Variant related genes	Relation type
ENSG00000177738	Chromatin interaction
ENSG00000251131	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993554	chr5:42720939-43251863	Bivalent/Poised TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	298 gene(s)	inside rSNPs	diseases
2	nsv462126	chr5:42728831-43237188	Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	297 gene(s)	inside rSNPs	diseases
3	nsv597925	chr5:42728831-43237188	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	297 gene(s)	inside rSNPs	diseases
4	nsv1023741	chr5:42768215-43348145	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
5	nsv537737	chr5:42768215-43348145	Genic enhancers Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
6	nsv534185	chr5:42804840-43067088	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	165 gene(s)	inside rSNPs	diseases
7	nsv1029288	chr5:42928085-43047323	Flanking Bivalent TSS/Enh Active TSS Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	120 gene(s)	inside rSNPs	diseases
8	nsv968169	chr5:42956713-43043472	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	116 gene(s)	inside rSNPs	diseases
9	nsv1024636	chr5:42959979-43295782	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	283 gene(s)	inside rSNPs	diseases
10	nsv537739	chr5:42959979-43295782	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	283 gene(s)	inside rSNPs	diseases
11	nsv980788	chr5:43034141-43034734	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43020200-43034800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:43020800-43037400	Weak transcription	HSMM	muscle
3	chr5:43020800-43038400	Weak transcription	Spleen	Spleen
4	chr5:43021200-43038600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:43022000-43036400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr5:43029400-43037600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr5:43030000-43034800	Weak transcription	GM12878-XiMat	blood
8	chr5:43030600-43034800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr5:43031200-43034800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr5:43033600-43035400	Flanking Active TSS	HUVEC	blood vessel
11	chr5:43033800-43035200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:43033800-43035200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:43033800-43035400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:43033800-43035400	Flanking Active TSS	NH-A	brain
15	chr5:43034000-43034800	Active TSS	Adipose Nuclei	Adipose
16	chr5:43034000-43034800	Active TSS	Psoas Muscle	Psoas
17	chr5:43034000-43034800	Active TSS	Right Atrium	heart
18	chr5:43034000-43035000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr5:43034000-43035000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr5:43034000-43035000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
21	chr5:43034000-43035000	Bivalent/Poised TSS	Left Ventricle	heart
22	chr5:43034000-43037000	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr5:43034200-43034800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr5:43034200-43034800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr5:43034200-43034800	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr5:43034200-43035000	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr5:43034200-43035400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr5:43034200-43035400	Enhancers	Primary T cells fromperipheralblood	blood
29	chr5:43034200-43035400	Enhancers	Primary hematopoietic stem cells	blood
30	chr5:43034200-43035600	Enhancers	Primary B cells from peripheral blood	blood
31	chr5:43034200-43037000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr5:43034400-43034800	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:43034400-43034800	Bivalent Enhancer	Fetal Thymus	thymus
34	chr5:43034400-43034800	Enhancers	NHDF-Ad	bronchial
35	chr5:43034400-43034800	Flanking Active TSS	NHEK	skin
36	chr5:43034400-43035000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr5:43034400-43035200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
38	chr5:43034400-43035400	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr5:43034400-43035400	Enhancers	Primary B cells from cord blood	blood
40	chr5:43034400-43035400	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr5:43034400-43035400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr5:43034400-43035400	Enhancers	Thymus	Thymus
43	chr5:43034400-43035600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr5:43034400-43035800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr5:43034400-43037000	Enhancers	Primary T cells from cord blood	blood
46	chr5:43034400-43037400	Enhancers	Dnd41	blood
47	chr5:43034600-43034800	Flanking Bivalent TSS/Enh	H9 Cell Line	embryonic stem cell
48	chr5:43034600-43034800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
49	chr5:43034600-43034800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
50	chr5:43034600-43034800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell

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