Variant report

Variant	rs541769865
Chromosome Location	chr4:8480169-8480170
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:11)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:11 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr4:8480066-8480394	ECC-1	luminal epithelium:	n/a	n/a
2	POLR2A	chr4:8478856-8480731	Hela-S3	cervix:	n/a	n/a
3	USF1	chr4:8480103-8480399	ECC-1	luminal epithelium:	n/a	n/a
4	POLR2A	chr4:8478899-8482832	K562	blood:	n/a	n/a
5	USF1	chr4:8480034-8480371	H1-hESC	embryonic stem cell:	n/a	n/a
6	POLR2A	chr4:8479786-8480902	HepG2	liver:	n/a	n/a
7	POLR2A	chr4:8480078-8481680	K562	blood:	n/a	n/a
8	JUN	chr4:8479875-8481512	K562	blood:	n/a	n/a
9	USF1	chr4:8480074-8480296	H1-hESC	embryonic stem cell:	n/a	n/a
10	POLR2A	chr4:8479870-8480945	GM12878	blood:	n/a	n/a
11	POLR2A	chr4:8479181-8480551	K562	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:8473752..8477708-chr4:8479447..8482230,3	K562	blood:
2	chr4:8479557..8483754-chr4:8505033..8507334,3	K562	blood:
3	chr4:8479058..8480948-chr4:8481115..8485111,3	MCF-7	breast:
4	chr4:8478212..8480998-chr4:8552903..8554781,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000205959	TF binding region
ENSG00000205959	Chromatin interaction
ENSG00000155275	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002794	chr4:8110083-8490934	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1002680	chr4:8357163-8721214	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv829854	chr4:8402921-8506407	Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3338691	chr4:8479502-8482000	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8447000-8480200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:8447200-8480200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr4:8447400-8482200	Strong transcription	Primary T cells from cord blood	blood
4	chr4:8465200-8482200	Strong transcription	Brain Germinal Matrix	brain
5	chr4:8465400-8480200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:8467600-8482200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr4:8467800-8480400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr4:8471200-8480600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr4:8471400-8480200	Weak transcription	HMEC	breast
10	chr4:8471800-8480800	Weak transcription	HepG2	liver
11	chr4:8471800-8483200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr4:8472000-8480200	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr4:8472200-8480800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr4:8473600-8501400	Weak transcription	Brain Substantia Nigra	brain
15	chr4:8474600-8480600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:8475000-8480200	Weak transcription	K562	blood
17	chr4:8475400-8480400	Strong transcription	Spleen	Spleen
18	chr4:8475600-8481400	Strong transcription	Fetal Brain Female	brain
19	chr4:8475600-8491400	Weak transcription	Aorta	Aorta
20	chr4:8475800-8480200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr4:8475800-8480400	Weak transcription	Small Intestine	intestine
22	chr4:8475800-8481200	Weak transcription	NHLF	lung
23	chr4:8475800-8491800	Weak transcription	Colon Smooth Muscle	Colon
24	chr4:8476000-8480800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr4:8476000-8481400	Strong transcription	Skeletal Muscle Male	skeletal muscle
26	chr4:8476200-8480600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr4:8476200-8480600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr4:8476200-8481800	Strong transcription	Fetal Stomach	stomach
29	chr4:8476400-8480200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr4:8476400-8481400	Strong transcription	Right Ventricle	heart
31	chr4:8476600-8481200	Genic enhancers	Placenta	Placenta
32	chr4:8476600-8481400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr4:8476600-8481400	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr4:8476600-8481400	Strong transcription	Lung	lung
35	chr4:8476600-8481800	Strong transcription	Fetal Muscle Trunk	muscle
36	chr4:8476800-8480200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr4:8476800-8480200	Strong transcription	Adipose Nuclei	Adipose
38	chr4:8476800-8480200	Strong transcription	Esophagus	oesophagus
39	chr4:8476800-8480600	Strong transcription	Stomach Smooth Muscle	stomach
40	chr4:8476800-8481200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr4:8476800-8481200	Strong transcription	Fetal Intestine Small	intestine
42	chr4:8476800-8481400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr4:8476800-8481600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr4:8477200-8480200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr4:8477200-8480600	Strong transcription	Thymus	Thymus
46	chr4:8477400-8481800	Strong transcription	Fetal Muscle Leg	muscle
47	chr4:8477600-8480200	Strong transcription	Brain Hippocampus Middle	brain
48	chr4:8477600-8481200	Strong transcription	Brain Cingulate Gyrus	brain
49	chr4:8477800-8481400	Genic enhancers	Ovary	ovary
50	chr4:8477800-8482800	Weak transcription	Fetal Lung	lung

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